PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026194-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 65aa    MW: 7429.82 Da    PI: 10.9484
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026194-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.4e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien + rqvtfskRr g+lKKA+ELSvLCda+va+iifs +gklye+s+
  SMil_00026194-RA_Salv  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAQVALIIFSAKGKLYEFST 59
                           79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.328161IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-29361IPR002100Transcription factor, MADS-box
CDDcd002654.03E-35360No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AQVALIIFSA KGKLYEFSTS  60
RLILY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17162162MEF2C
5f28_B2e-17162162MEF2C
5f28_C2e-17162162MEF2C
5f28_D2e-17162162MEF2C
6byy_A2e-17162162MEF2 CHIMERA
6byy_B2e-17162162MEF2 CHIMERA
6byy_C2e-17162162MEF2 CHIMERA
6byy_D2e-17162162MEF2 CHIMERA
6bz1_A2e-17162162MEF2 CHIMERA
6bz1_B2e-17162162MEF2 CHIMERA
6bz1_C2e-17162162MEF2 CHIMERA
6bz1_D2e-17162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem. Regulates auxin transport and gradients in the root meristematic cells via direct regulation of the auxin efflux carrier PIN1 and PIN4 gene expression. Binds specifically to the CArG-box DNA sequences in the promoter regions of PIN1 and PIN4 genes (PubMed:24121311). Involved in the regulation of shoot apical meristem (SAM) cell identities and transitions. Promotes flowering transition and participates in flower meristem maintenance and determinacy. Positively regulates TFL1 and WUS expression. Binds directly to the TFL1 regulatory sequences (PubMed:25636918). {ECO:0000269|PubMed:24121311}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:24121311}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081162.11e-33MADS-box protein SOC1
SwissprotQ388382e-33AGL14_ARATH; Agamous-like MADS-box protein AGL14
TrEMBLA0A2G9G0J16e-33A0A2G9G0J1_9LAMI; Uncharacterized protein
TrEMBLA0A2G9GAA13e-33A0A2G9GAA1_9LAMI; Uncharacterized protein
TrEMBLM1C2V56e-33M1C2V5_SOLTU; Uncharacterized protein
STRINGXP_006440498.16e-33(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.18e-36AGAMOUS-like 14
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]