PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023422-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 25474.4 Da PI: 6.6763 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++ Ed l ++v+q+G ++W++I++ ++ gR++k+c++rw + SMil_00023422-RA_Salv 13 KGPWSPAEDNHLRELVQQHGARNWSLISKSIQ-GRSGKSCRLRWCNQ 58 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 59 | 1.1e-18 | 67 | 109 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde++++a+++ G++ W+tIar ++ gRt++ +k++w++ SMil_00023422-RA_Salv 67 PFTPEEDEIILKAHEKIGNK-WATIARLLN-GRTDNAIKNHWNST 109 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.05 | 8 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-32 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-14 | 12 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-18 | 13 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-26 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.86E-14 | 15 | 57 | No hit | No description |
SMART | SM00717 | 1.4E-15 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.559 | 65 | 114 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-12 | 67 | 110 | No hit | No description |
Pfam | PF00249 | 7.6E-16 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAAGKNDSAD RIKGPWSPAE DNHLRELVQQ HGARNWSLIS KSIQGRSGKS CRLRWCNQLS 60 PEVEHRPFTP EEDEIILKAH EKIGNKWATI ARLLNGRTDN AIKNHWNSTL KRRFSADSSD 120 GGEERLSQVL RRANSGDVST AMMNGLKLSP LERSSRSDSD ISDSGYNAEL SFLIATNAVV 180 VPREESPPAA AGVEDCDGEF TALTLCLPGI GSVSPANGIG KTETKEIRGE GLVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-39 | 10 | 114 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020551750.1 | 7e-98 | transcription factor MYB44-like | ||||
Swissprot | Q9FDW1 | 2e-61 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A0K1SBK4 | 4e-83 | A0A0K1SBK4_REHGL; R2R3-MYB protein | ||||
STRING | Migut.B00390.1.p | 2e-73 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16860 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 9e-62 | myb domain protein r1 |