PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019949-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 372aa    MW: 41999.9 Da    PI: 4.476
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019949-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36431342102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+ye++ed++++ +isws+ +nsf+v+d ++f++++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g
  SMil_00019949-RA_Salv  43 FLTKTYEMVEDPSTDAVISWSKAKNSFIVWDYHKFSTSLLPKYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGG 121
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll++ikr+++
  SMil_00019949-RA_Salv 122 QKHLLKTIKRRRN 134
                            **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3839132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5939132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3439132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.6E-3243132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-204366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEGVKVKVKV EDENSGGGAP SESSSSSSPQ PMEGLHEMGP PPFLTKTYEM VEDPSTDAVI  60
SWSKAKNSFI VWDYHKFSTS LLPKYFKHSN FSSFIRQLNT YGFRKVDPDR WEFANEGFLG  120
GQKHLLKTIK RRRNVMQGVV AQQAGGACVE LGHYGMDEEL DRLRRDRNLL VSEITKLKQQ  180
QQSSRQQVMA MEERLLNTER KQQQMLSFLA KAFKNPSFVQ QYVDKYSNEK NIEIGQKRRI  240
SMSPSVENLQ DVATVSTGSN LNYARDEKEE LADIQLKVDS LFSSVMEDGS STDLNGLSTE  300
TDPDPSVGYP NLNDMTNMWE EFLSDDLIIG DEAAEEVLAA DHLSDIEVEE LVAKTPDWGE  360
DLQDIVDQLG FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-264113227129Heat shock factor protein 1
5d5v_B2e-264113227129Heat shock factor protein 1
5d5v_D2e-264113227129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKTIKRR
2161166RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549475.11e-164heat shock factor protein HSF30
SwissprotP411521e-147HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A4D8Y9010.0A0A4D8Y901_SALSN; Heat shock transcription factor, other eukaryote
STRINGXP_009799323.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-102heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]