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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015458-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HSF | ||||||||
Protein Properties | Length: 368aa MW: 42464.3 Da PI: 5.9005 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.5 | 1.2e-34 | 64 | 155 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k++e+++d+e++ +isws ++nsf+v+d+++f++++Lp++Fkhsnf+SFvRQLn+Y F+k+++++ weF+++ F++g SMil_00015458-RA_Salv 64 FLRKTFEMVDDPETDCIISWSPTKNSFIVWDPHRFSTDLLPRHFKHSNFSSFVRQLNTYRFRKIDSDR---------WEFANEGFQQG 142 9********************999*****************************************999.........*********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 kk+ll++i r+k+ SMil_00015458-RA_Salv 143 KKHLLKHITRRKQ 155 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.2E-38 | 57 | 148 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.11E-34 | 59 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-57 | 60 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-31 | 64 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-17 | 64 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-17 | 102 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 103 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-17 | 115 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
LALQMARNEL TSAEIMQSIK KYEVLMSVKE EPPVSHEESG GAVTEEERLP KPLDGLKENG 60 PPPFLRKTFE MVDDPETDCI ISWSPTKNSF IVWDPHRFST DLLPRHFKHS NFSSFVRQLN 120 TYRFRKIDSD RWEFANEGFQ QGKKHLLKHI TRRKQNFQIS RKQSWVDSPK HGAEEELENL 180 KNNQNKLQTE VLNLRQQQEM TQSHLAAVEK RLRITETKQK HMTLFLIKFM KNPQLLQRIT 240 EKMKKIRALG SGEVLKKRRL AAPDLEEDDA CLMAAMRAVD VDDDKRIQSD IETLLCCDES 300 GTGSSETTQS RDDFVLWEKL LEDDMIYEDD RAQCDVVSEL ENVVAKPSEC GTQMRGLVEL 360 VGCLATIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-22 | 55 | 153 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-22 | 55 | 153 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-22 | 55 | 153 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022856763.1 | 1e-122 | heat stress transcription factor A-2-like | ||||
TrEMBL | A0A2G9GAA5 | 1e-140 | A0A2G9GAA5_9LAMI; Heat shock transcription factor | ||||
STRING | XP_009606363.1 | 1e-113 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5681 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 7e-74 | heat shock transcription factor A2 |