PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00015395-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 35187.7 Da PI: 8.0023 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148 | 4.7e-46 | 12 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppG+rFhP+deel+++yL++k+++ +l+ +vi+++++y ++PwdLp++ +++e+yfF++rd+ky++g r+nra++sgyWkatg+d SMil_00015395-RA_Salv 12 PPGIRFHPSDEELISFYLQRKMKSLPLPP-NVITDIHLYCYNPWDLPRNSMFGDEELYFFTPRDRKYPNGGRPNRAAASGYWKATGTD 98 9*************************999.99***************7666799********************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ s+ +++++g+kk Lvfykgr p+g++ dWvm eyrl SMil_00015395-RA_Salv 99 QPIRSScGSRKIGVKKGLVFYKGRPPSGHRMDWVMTEYRL 138 *****988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-56 | 6 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.941 | 11 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-23 | 12 | 138 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.11E-56 | 177 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MEEIPIPKNQ YPPGIRFHPS DEELISFYLQ RKMKSLPLPP NVITDIHLYC YNPWDLPRNS 60 MFGDEELYFF TPRDRKYPNG GRPNRAAASG YWKATGTDQP IRSSCGSRKI GVKKGLVFYK 120 GRPPSGHRMD WVMTEYRLPD TSRPSRSTGS MRVSSLSLSL IHQTHSPTTS LSLSPSQLDD 180 WVLCRIRRKG NMSKNENHDS HARDMLSDYL KSNEYNLIVS LLAGHDPVSL STAPTTIYQN 240 GDKIDGDEPN TQQIISYGDL QLLPSNDFSF QSAPLVAAAD ARPYAQHVCK PSSISLQELD 300 TLPPLQEYFL H |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 2 | 189 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 2 | 189 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 2 | 189 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 2 | 189 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-52 | 2 | 189 | 11 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-52 | 2 | 189 | 11 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-52 | 2 | 189 | 11 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-52 | 2 | 189 | 11 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-52 | 2 | 189 | 11 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-52 | 2 | 189 | 11 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-52 | 2 | 189 | 11 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-52 | 2 | 189 | 11 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-52 | 2 | 189 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 2 | 189 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552290.1 | 6e-97 | NAC domain-containing protein 18-like isoform X1 | ||||
Swissprot | A0SPJ6 | 2e-65 | NAMB2_TRITD; NAC transcription factor NAM-B2 | ||||
Swissprot | Q8H4S4 | 2e-65 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A2G9H970 | 3e-95 | A0A2G9H970_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02201.1.p | 1e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13390 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-61 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|