PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014977-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WOX | ||||||||
Protein Properties | Length: 292aa MW: 33191.8 Da PI: 9.6537 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.7 | 3.5e-22 | 67 | 126 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Lee++++ r+p+ae+++++A+kl +++ ++V++WFqN++a+e++ SMil_00014977-RA_Salv 67 TRWNPTPEQLQALEEMYRRgIRTPTAEQIQQIAAKLrrfgKIEGKNVFYWFQNHKARERQ 126 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.2 | 3.2e-37 | 66 | 128 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+PtpeQ++ Lee+y++G+rtP++e+iq+i+a+L+++Gkie+kNVfyWFQN+kaRerqk+ SMil_00014977-RA_Salv 66 STRWNPTPEQLQALEEMYRRGIRTPTAEQIQQIAAKLRRFGKIEGKNVFYWFQNHKARERQKK 128 79***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.2E-5 | 64 | 131 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.24E-13 | 67 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.96E-7 | 67 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 67 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-19 | 67 | 126 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.596 | 72 | 127 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MWMMMDSNSD EFKAAADPVI GRKLRPLMPR PIYSTPSCCC LRNPNILSWN HSASDHIHKR 60 EAPLVSTRWN PTPEQLQALE EMYRRGIRTP TAEQIQQIAA KLRRFGKIEG KNVFYWFQNH 120 KARERQKKRR QLDQLLAAKN TPRLSRRCFE NEHHRKVPMP SNCSTASEGS DCTKLKNLRA 180 WVTTHKQRQN YGDSASMHGA VIAAECGWNH KELGVAITTT PTAAGNGLEL ELDLDLNAGK 240 ATGQEENTKP YENQTTLELF PSPTPPPQQL PITFTPTPTP THSFIEFLPI KN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020548611.1 | 2e-70 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A2G9I890 | 1e-76 | A0A2G9I890_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L00355.1.p | 3e-66 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-37 | WUSCHEL related homeobox 1 |