PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014977-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WOX
Protein Properties Length: 292aa    MW: 33191.8 Da    PI: 9.6537
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014977-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.73.5e-2267126357
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            +R+++t+eql++Lee++++  r+p+ae+++++A+kl    +++ ++V++WFqN++a+e++
  SMil_00014977-RA_Salv  67 TRWNPTPEQLQALEEMYRRgIRTPTAEQIQQIAAKLrrfgKIEGKNVFYWFQNHKARERQ 126
                            8*****************99**************************************97 PP
2Wus_type_Homeobox115.23.2e-3766128365
      Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                            +tRW+PtpeQ++ Lee+y++G+rtP++e+iq+i+a+L+++Gkie+kNVfyWFQN+kaRerqk+
  SMil_00014977-RA_Salv  66 STRWNPTPEQLQALEEMYRRGIRTPTAEQIQQIAAKLRRFGKIEGKNVFYWFQNHKARERQKK 128
                            79***********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-564131IPR001356Homeobox domain
SuperFamilySSF466893.24E-1367132IPR009057Homeodomain-like
CDDcd000861.96E-767128No hitNo description
Gene3DG3DSA:1.10.10.601.5E-967126IPR009057Homeodomain-like
PfamPF000461.0E-1967126IPR001356Homeobox domain
PROSITE profilePS5007111.59672127IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MWMMMDSNSD EFKAAADPVI GRKLRPLMPR PIYSTPSCCC LRNPNILSWN HSASDHIHKR  60
EAPLVSTRWN PTPEQLQALE EMYRRGIRTP TAEQIQQIAA KLRRFGKIEG KNVFYWFQNH  120
KARERQKKRR QLDQLLAAKN TPRLSRRCFE NEHHRKVPMP SNCSTASEGS DCTKLKNLRA  180
WVTTHKQRQN YGDSASMHGA VIAAECGWNH KELGVAITTT PTAAGNGLEL ELDLDLNAGK  240
ATGQEENTKP YENQTTLELF PSPTPPPQQL PITFTPTPTP THSFIEFLPI KN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548611.12e-70WUSCHEL-related homeobox 3-like
TrEMBLA0A2G9I8901e-76A0A2G9I890_9LAMI; Uncharacterized protein
STRINGMigut.L00355.1.p3e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-37WUSCHEL related homeobox 1