PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014568-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 327aa MW: 35199.5 Da PI: 10.7715

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014568-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	155.7	2.7e-48	75	197	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg 88 +kkdrhski T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WLl+++k+aikel+++ ++ss+s+ce ss++ ++ SMil_00014568-RA_Salv 75 AKKDRHSKINTAQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELVQSasGNSSPSACEMISSENGGE----- 157 79***********************************************************66444555674444444444..... PP TCP 89 kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 ++ +++k++a+a ++akesrakarararert ekm+ik+ SMil_00014568-RA_Salv 158 ------YSNANRRKDKAAAPSVAKESRAKARARARERTLEKMCIKQ 197 ......24445666677789**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-37	75	194	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.897	76	134	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.759	175	192	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
LAGTLTSSRP VPPPAPAPAP STSTGSKSCS TTTTTTTPRP SRGSTSPTPT PPKTAAWAWA 60 GAPRPRLGLV AGAGAKKDRH SKINTAQGPR DRRVRLSIGI ARKFFDLQEM LGFDKPSKTL 120 DWLLTKSKTA IKELVQSASG NSSPSACEMI SSENGGEYSN ANRRKDKAAA PSVAKESRAK 180 ARARARERTL EKMCIKQLGG DHRCEASDLN ASSSFQCRNN QQLEFLQLSA GSSTAATAAG 240 FRDHPVYHFP SPPPTQDLIQ ESVVIKRKNK INSNNPSSLL GFQQNLVLNS NYMIPSAANE 300 NWDNVFGQSN LHAAFDHHKF FNSSSNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:10571179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM526856	1e-60	KM526856.1 Perovskia atriplicifolia TCP transcription factor (CYC2A) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835027.1	3e-55	PREDICTED: transcription factor DICHOTOMA-like
Refseq	XP_020554786.1	2e-55	transcription factor CYCLOIDEA
Swissprot	Q9SNW8	5e-49	DICH_ANTMA; Transcription factor DICHOTOMA
TrEMBL	A0A096ZGE7	1e-102	A0A096ZGE7_PERAT; TCP transcription factor (Fragment)
STRING	Migut.K00858.1.p	1e-54	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	2e-29	TCP family protein

Publications ? help Back to Top
Luo D, et al. Control of organ asymmetry in flowers of Antirrhinum. Cell, 1999. 99(4): p. 367-76 [PMID:10571179]