PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012936-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 289aa MW: 32460.8 Da PI: 7.2488

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012936-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.6	8.3e-52	11	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+deel+++yL k ++g +++l + +vd++k+ePwd+p + + kewyf+s+rd+kyatg r+nrat sgyWkatgk SMil_00012936-RA_Salv 11 LPPGFRFHPRDEELICDYLLKWITGGPHPL-PLLIQVDLNKCEPWDIPDYACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGK 97 79***********************999.77999********7666789***************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 d+++++ kg lvg++ktLvfy+grapkg+ktdWvmhe+rle SMil_00012936-RA_Salv 98 DRAIIR-KGVLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 137 *9.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-63	3	162	IPR003441	NAC domain
PROSITE profile	PS51005	56.164	11	162	IPR003441	NAC domain
Pfam	PF02365	6.1E-26	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSSLSSVEAK LPPGFRFHPR DEELICDYLL KWITGGPHPL PLLIQVDLNK CEPWDIPDYA 60 CVGGKEWYFY SQRDRKYATG LRTNRATVSG YWKATGKDRA IIRKGVLVGM RKTLVFYQGR 120 APKGRKTDWV MHEFRLEGPH GPGPKSLSPV KEDWVLCRVF FKSRSESPAK SEEAAGSSSY 180 DVVNGPSLPP LTDPFFSLDE YHHEQVPCFS IFNTNPNLSL VNHMDPPQIP PPPIHDPSSC 240 DEKMIKAVLN HLTRMESGND QTSIKGGSPS FGEGSSDSYL SEVVWNNYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-50	7	165	13	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-50	7	165	13	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-50	7	165	13	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-50	7	165	13	168	NO APICAL MERISTEM PROTEIN
3swm_A	8e-50	7	165	16	171	NAC domain-containing protein 19
3swm_B	8e-50	7	165	16	171	NAC domain-containing protein 19
3swm_C	8e-50	7	165	16	171	NAC domain-containing protein 19
3swm_D	8e-50	7	165	16	171	NAC domain-containing protein 19
3swp_A	8e-50	7	165	16	171	NAC domain-containing protein 19
3swp_B	8e-50	7	165	16	171	NAC domain-containing protein 19
3swp_C	8e-50	7	165	16	171	NAC domain-containing protein 19
3swp_D	8e-50	7	165	16	171	NAC domain-containing protein 19
4dul_A	7e-50	7	165	13	168	NAC domain-containing protein 19
4dul_B	7e-50	7	165	13	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095676.1	1e-140	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	1e-105	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A2G9I9R7	1e-129	A0A2G9I9R7_9LAMI; Uncharacterized protein
STRING	Migut.M01566.1.p	1e-124	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-105	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]