PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012440-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 147aa MW: 16244.1 Da PI: 4.9039 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.6 | 1.2e-16 | 9 | 56 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+++ +r++tf+kRr+g++KKA E + L d +a++ifss+ + y + SMil_00012440-RA_Salv 9 LIDDDAKRHTTFTKRRHGLIKKADEFCRLSDSTAALLIFSSSKNCYAF 56 699**************************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.002 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.24E-22 | 1 | 68 | No hit | No description |
SMART | SM00432 | 1.0E-18 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-13 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-21 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-16 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-13 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-13 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MRRSIEIKLI DDDAKRHTTF TKRRHGLIKK ADEFCRLSDS TAALLIFSSS KNCYAFGHPE 60 VDSVLDRYDA ADSSSATGAV WEEVEAVTEM ESRIGNAVET GRWEEAVRGL GLDAFDQLTA 120 ELEKFRRQVA ALQTKFAAAP AEETGGS |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-20 | AGAMOUS-like 61 |