PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012393-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 28113.5 Da PI: 6.3074 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.3 | 5.5e-44 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +p+GfrF Pt+eel+++yL++k++g + ++++vi+ v+iy+++PwdLp+ +++++++w+fF+ ++++a+g r+nr t++gyWk SMil_00012393-RA_Salv 4 MPVGFRFYPTEEELLSYYLHHKLSGMNPDIDRVIPLVNIYDYNPWDLPQfageVCRGDREQWFFFTAMQEREARGGRTNRLTQNGYWK 91 699***************************99****************656754455777**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+ +v++ ++ g kkt+vfy+grap+g+kt+W m+ey+l SMil_00012393-RA_Salv 92 ATGSPCDVFTCQNLRLGKKKTMVFYEGRAPHGSKTTWKMNEYKL 135 **********99999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-48 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.53 | 4 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-22 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVDMPVGFRF YPTEEELLSY YLHHKLSGMN PDIDRVIPLV NIYDYNPWDL PQFAGEVCRG 60 DREQWFFFTA MQEREARGGR TNRLTQNGYW KATGSPCDVF TCQNLRLGKK KTMVFYEGRA 120 PHGSKTTWKM NEYKLYHQSS AAASPQLKEE LSLCRIYKRS KCARPFDRRP PAEAPAAHDE 180 AARQYYDDHH HRSIADVAVA SNDNQQNPAV GTEFTNWDMQ TQTEPLWDSE DLLMILNWFD 240 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-35 | 2 | 164 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-35 | 2 | 164 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-35 | 2 | 164 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-35 | 2 | 164 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-34 | 2 | 164 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-34 | 2 | 164 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-34 | 2 | 164 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-34 | 2 | 164 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-34 | 2 | 164 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-34 | 2 | 164 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-34 | 2 | 164 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-34 | 2 | 164 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-35 | 2 | 164 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-35 | 2 | 164 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077925.1 | 2e-88 | NAC domain-containing protein 90-like | ||||
TrEMBL | A0A4D8Z4J0 | 1e-126 | A0A4D8Z4J0_SALSN; Uncharacterized protein | ||||
STRING | XP_010271606.1 | 2e-80 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-64 | NAC domain containing protein 61 |