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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012296-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 213aa MW: 25227.5 Da PI: 5.7138 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.7 | 7.6e-43 | 5 | 134 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +GfrF Pt+eel+++yL kk++g + ++++vi+ ++iy++ Pw+Lp+ +++++++w+fF+ ++++a+g r+nr t++gyWkat SMil_00012296-RA_Salv 5 VGFRFYPTEEELLCYYLPKKLNGPTPHIDRVIPLLRIYDYSPWELPQfageVCRGDREQWFFFTAMQEREARGGRTNRLTQNGYWKAT 92 7***************************999***************656754455777****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +v+++++ +g kkt+vfy+grap+g+kt+W m+ey+l SMil_00012296-RA_Salv 93 GSPCDVFDRRNLRIGRKKTMVFYEGRAPHGSKTTWKMNEYKL 134 ****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.207 | 3 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-46 | 4 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-21 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEEHVGFRFY PTEEELLCYY LPKKLNGPTP HIDRVIPLLR IYDYSPWELP QFAGEVCRGD 60 REQWFFFTAM QEREARGGRT NRLTQNGYWK ATGSPCDVFD RRNLRIGRKK TMVFYEGRAP 120 HGSKTTWKMN EYKLYHQSSI SQLREELSLC RIYKKSEIVR AFDRRPPAEE AAVTAIPNPT 180 AVENHEFDWD MATDEIESLE DSDIQMLLNW FDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-30 | 6 | 155 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-30 | 6 | 155 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-30 | 6 | 155 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-30 | 6 | 155 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-30 | 6 | 155 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-30 | 6 | 155 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-30 | 6 | 155 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-30 | 6 | 155 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-30 | 6 | 155 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-30 | 6 | 155 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-30 | 6 | 155 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-30 | 6 | 155 | 23 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-30 | 6 | 155 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-30 | 6 | 155 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022889463.1 | 1e-74 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 8e-62 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A4D9APP5 | 1e-108 | A0A4D9APP5_SALSN; Uncharacterized protein | ||||
STRING | Solyc11g068620.1.1 | 2e-69 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 2e-66 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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