PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011019-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WOX | ||||||||
Protein Properties | Length: 263aa MW: 29728.3 Da PI: 5.0662 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1.1e-20 | 84 | 144 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps+++++e++++l +++e++V++WFqNrRa+ k+ SMil_00011019-RA_Salv 84 RQRWTPTPMQLQILERIFDQgIGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 144 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.8 | 1.1e-33 | 84 | 146 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq SMil_00011019-RA_Salv 84 RQRWTPTPMQLQILERIFDQGIGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 146 89***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 79 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.463 | 80 | 145 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-18 | 82 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.8E-14 | 82 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.46E-13 | 84 | 146 | No hit | No description |
Pfam | PF00046 | 1.6E-18 | 84 | 144 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEWEKQPPQQ AEEPGGGGGM FVKVMTDEQM EVLRKQIAVY ATICEQLVEL HKSLTSQTDL 60 AGVRLGNLYC DPLITSGAHK ITGRQRWTPT PMQLQILERI FDQGIGTPSK QKIKEITSEL 120 SQHGQISETN VYNWFQNRRA RSKRKQQAAP SNNAESEVET EVESPNEKKT KPEEFQPQQI 180 LTSRPEDLCF QTSSAIHSVD PRTSKPEPML PPEGSSKFGG NFGEMSFYGN MLSNPRMDQF 240 IGKIEVPGNY NPYLQQEDYN MDG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099896.1 | 1e-166 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 2e-94 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A4D8YII2 | 1e-178 | A0A4D8YII2_SALSN; Uncharacterized protein | ||||
STRING | Migut.H02206.1.p | 1e-144 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5675 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-77 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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