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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010646-RA_Salv | ||||||||
Common Name | SmWRI1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33719.2 Da PI: 4.2227 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 79 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I ++ +k+ +lg++ t eeAa+a++ a+ +++g SMil_00010646-RA_Salv 79 SKYRGVARHHHNGRWEARIGRVCG---NKYLYLGTYSTQEEAAAAYDMAAIEFRG 130 89****99***********99644...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.389 | 1 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-8 | 10 | 45 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-7 | 13 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-18 | 79 | 140 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.6E-12 | 79 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-17 | 79 | 140 | No hit | No description |
PROSITE profile | PS51032 | 18.452 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-29 | 80 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-19 | 80 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 120 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MSLICELNYD AINVGAYDNE EDAARTYDLA ALKYWGPATI LNFPVEGYTK DVEEMQKLSK 60 EEYLASLRRR SSGFSRGVSK YRGVARHHHN GRWEARIGRV CGNKYLYLGT YSTQEEAAAA 120 YDMAAIEFRG PNAVTNFDIS NYADKLKKFI PEVQVEEVHV KQETNSTPPD EVQADEDPHP 180 VAETSSPKPE PKDSNESEGM VTMEPIEEHG HPWDLCLDTL FNILPIPDMP LGKASEVFDY 240 KGFDDDIECI FDEPLDDNEI LQYGGQIDAA DALVAQDLKG RDASASTSPS SSPLSSTTSA 300 CSNI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF887944 | 0.0 | KF887944.1 Salvia miltiorrhiza AP2 / EREBP Transcription Factor (SmWRI1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078716.1 | 1e-132 | ethylene-responsive transcription factor WRI1 | ||||
TrEMBL | A0A0R5QQ64 | 0.0 | A0A0R5QQ64_SALMI; AP2 / EREBP Transcription Factor | ||||
STRING | Migut.B01163.1.p | 1e-124 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9134 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-60 | AP2 family protein |