PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00009492-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24247.6 Da PI: 9.4528 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68 | 9.4e-22 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++e+ +i+fs+ gk++ + SMil_00009492-RA_Salv 10 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIGIIVFSPAGKVFSF 57 58888899*************************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.922 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-28 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.00E-36 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 1.2E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRQKIKIQK IEVKNHLQVT FSKRRSGLFK KASELCTLCG VEIGIIVFSP AGKVFSFGHP 60 NVESIIDRYL SRNPAPNAND PFHLMEAQRN ASVRELNQQL GHILNEVEAE RKRGESLDSM 120 RKANQSHYWW ESPINKLGLE ELEQVKEAME ELKKNVNHQA AKLVNASATS LFMANRAGVF 180 DHYETKPTHG VVTSNINNIA AAAAAANGNF GYCHGFF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-14 | 1 | 87 | 1 | 87 | MEF2C |
5f28_B | 1e-14 | 1 | 87 | 1 | 87 | MEF2C |
5f28_C | 1e-14 | 1 | 87 | 1 | 87 | MEF2C |
5f28_D | 1e-14 | 1 | 87 | 1 | 87 | MEF2C |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088151.1 | 1e-119 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A4D8YTJ1 | 1e-117 | A0A4D8YTJ1_SALSN; Uncharacterized protein | ||||
STRING | Migut.N01504.1.p | 5e-96 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 9e-56 | AGAMOUS-like 61 |