PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009231-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 323aa    MW: 36592.8 Da    PI: 5.2829
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009231-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.61.4e-22958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           k+ien++n qvtfskRr g++KKA+E+ vLCd++  +i++s++g+l  +s
  SMil_00009231-RA_Salv  9 KKIENTTNLQVTFSKRRYGLIKKAYEIAVLCDIDLTLIMLSPSGRLSHFS 58
                           68********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.24161IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-30160IPR002100Transcription factor, MADS-box
CDDcd002658.50E-30278No hitNo description
SuperFamilySSF554556.15E-25288IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRSKLPIKK IENTTNLQVT FSKRRYGLIK KAYEIAVLCD IDLTLIMLSP SGRLSHFSGR  60
KRVEDVIYRY INLSDRDRGG IIANREQIVN TLTKIKTEKD LAMQSAATPG SDTEEIQKEI  120
LDLQRQLEKA QDELRVFEPD LDKFTTLGDF EKSEVQLKEG LRRRNLFNKV GQQSSYQDTY  180
REINTVVQYL TEAQTHGAKP LLENEDDQGI ELSNIEHVNF GSDACSANLR KQSSPTMYES  240
VSQTSGNENA QTVEGCSNNV LSDDAFQQFH SSKNHYTSLL QPDNSTHFKD VLEGSNETLA  300
ALDEHTMFLP SQCHQQPSSE LHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097601.11e-158agamous-like MADS-box protein AGL66
TrEMBLA0A4D9AL800.0A0A4D9AL80_SALSN; Uncharacterized protein
STRINGXP_010269101.11e-67(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-54AGAMOUS-like 104