PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008897-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 30687.3 Da    PI: 8.4772
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008897-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.3e-27958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           k+ien   rqvtfskRr+g++KKA+EL vLC+aevaviifs+tgkl+e++
  SMil_00008897-RA_Salv  9 KKIENVNSRQVTFSKRRAGLFKKANELAVLCEAEVAVIIFSNTGKLFEFA 58
                           68***********************************************8 PP
2K-box61.63e-2110418519100
                  K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                            +e++ Lk+eie+L+ +q +l+G+dL+ +s +eL+ Le+qL ++l  i+++K++lll+++ + +++e+++  en++Lr+++ee
  SMil_00008897-RA_Salv 104 KEADILKEEIEKLKLKQLRLMGKDLTGMSSQELHLLERQLSEGLMCIKERKEQLLLQELAQCRMQEQRAVLENETLRRQVEE 185
                            6999***************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.553161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002657.28E-41272No hitNo description
SuperFamilySSF554552.09E-32277IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.33399189IPR002487Transcription factor, K-box
PfamPF014867.2E-16104183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRGKIEIKK IENVNSRQVT FSKRRAGLFK KANELAVLCE AEVAVIIFSN TGKLFEFANS  60
SMKKILSRYK KCVETTKSSA AELEPEELCS KFFTLSLQKP PQPKEADILK EEIEKLKLKQ  120
LRLMGKDLTG MSSQELHLLE RQLSEGLMCI KERKEQLLLQ ELAQCRMQEQ RAVLENETLR  180
RQVEELRGFF PPTSSPTPPL CIEYHSSVIK SDPAMKEGSR SPETACNGGL AEEDSDTTLQ  240
LGLPYGNGSR KRKMIDGETQ SSTSETQFRL HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20169169MEF2C
5f28_B5e-20169169MEF2C
5f28_C5e-20169169MEF2C
5f28_D5e-20169169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253SRKRKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091774.11e-126agamous-like MADS-box protein AGL15
TrEMBLA0A4D8Z0G31e-125A0A4D8Z0G3_SALSN; MADS-box transcription factor, plant
STRINGXP_006482951.13e-96(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-53AGAMOUS-like 15