PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008651-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LFY | ||||||||
Protein Properties | Length: 123aa MW: 13976 Da PI: 9.9137 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 249.2 | 1.8e-76 | 2 | 108 | 280 | 386 |
FLO_LFY 280 kvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsi 367 +vtnqvfryakkaga+yinkPkmrhYvhCYalhcLdee+snalrrafkergenvGawrqacykplva+aarqgwdida+fnahprLsi SMil_00008651-RA_Salv 2 QVTNQVFRYAKKAGANYINKPKMRHYVHCYALHCLDEETSNALRRAFKERGENVGAWRQACYKPLVAVAARQGWDIDAIFNAHPRLSI 89 69************************************************************************************** PP FLO_LFY 368 WYvPtkLrqLChlerskas 386 WYvPtkLrqLCh+ers+++ SMil_00008651-RA_Salv 90 WYVPTKLRQLCHAERSTTA 108 ***************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 2.9E-74 | 2 | 107 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MQVTNQVFRY AKKAGANYIN KPKMRHYVHC YALHCLDEET SNALRRAFKE RGENVGAWRQ 60 ACYKPLVAVA ARQGWDIDAI FNAHPRLSIW YVPTKLRQLC HAERSTTAAS SSITAAGVDH 120 LPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 4e-69 | 2 | 118 | 58 | 174 | PROTEIN LEAFY |
2vy2_A | 4e-69 | 2 | 118 | 58 | 174 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May regulate indeterminacy during leaf and flower development. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY524032 | 1e-148 | AY524032.1 Salvia coccinea floricaula (FLO) mRNA, FLOA2 paralog, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856831.1 | 1e-77 | PREDICTED: floricaula protein-like | ||||
Swissprot | O48559 | 6e-75 | UNI_PEA; Protein UNIFOLIATA | ||||
TrEMBL | A0A4D8ZXL4 | 5e-84 | A0A4D8ZXL4_SALSN; Uncharacterized protein | ||||
STRING | Migut.I00669.1.p | 4e-77 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6668 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 6e-71 | floral meristem identity control protein LEAFY (LFY) |