PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00005757-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 355aa MW: 39824.8 Da PI: 7.3742

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005757-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	281	303	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ SMil_00005757-RA_Salv 281 FMCRKCGKAFAVRGDWRTHEKNC 303 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.45E-5	193	219	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.3E-6	197	216	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	197	224	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.58	197	219	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	199	219	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.52E-6	266	301	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.5E-6	268	301	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	281	301	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	281	301	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
CVLYCTYSPF LSLSIKPASS SSPPFSSPTF FTMTDPHSNL YAQWLFKYNP LHHFPTSNPP 60 HHPFLHSYAA ANNHHYQTPP PSPPLREALP LLSRYEEQSC SGMDLENINK PSKTIQIPSS 120 SSAQEDDDDD NGVTVALHIG LPNPSAADLA SVMVSSDNGG DKEEAADLAA EYPITRLNKG 180 QYWIPTPSQI LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRRGPESL RGTQPTGMLR 240 LPCYCCAPAC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE 300 KNCGKLWYCI CGSDFKHKRS LKDHIKAFGT GHGAYGVDGF EEEDEPASEV EQDED

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

CVLYCTYSPF LSLSIKPASS SSPPFSSPTF FTMTDPHSNL YAQWLFKYNP LHHFPTSNPP  60
HHPFLHSYAA ANNHHYQTPP PSPPLREALP LLSRYEEQSC SGMDLENINK PSKTIQIPSS  120
SSAQEDDDDD NGVTVALHIG LPNPSAADLA SVMVSSDNGG DKEEAADLAA EYPITRLNKG  180
QYWIPTPSQI LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRRGPESL RGTQPTGMLR  240
LPCYCCAPAC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE  300
KNCGKLWYCI CGSDFKHKRS LKDHIKAFGT GHGAYGVDGF EEEDEPASEV EQDED

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277537.1	1e-179	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-142	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A4D9B0E7	0.0	A0A4D9B0E7_SALSN; Uncharacterized protein
STRING	VIT_08s0007g08070.t01	1e-178	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-141	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]