PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005335-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 29563.7 Da    PI: 6.323
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005335-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.9e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien   rqvtfskRr g+lKKA+EL vLCda+vaviifs tgklye++s
  SMil_00005335-RA_Salv  9 KKIENVNSRQVTFSKRRGGLLKKANELAVLCDAQVAVIIFSGTGKLYEFAS 59
                           68***********************************************86 PP
2K-box65.22.4e-229918811100
                  K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            +++ e+ + + + L+ eie+L   +R+++G++L++L+++eL++LeqqL +++ +++++K++llleq+e ++++ek++ ++n+ L +k+
  SMil_00005335-RA_Salv  99 DNQPEEATIDTDSLRHEIEKLHLMHRRMMGKELDELTYNELHNLEQQLTEGILSVKERKEKLLLEQMEISKQQEKKIVQQNEVLLEKI 186
                            667788888999***************************************************************************9 PP

                  K-box  99 ee 100
                            ee
  SMil_00005335-RA_Salv 187 EE 188
                            97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.567161IPR002100Transcription factor, MADS-box
CDDcd002651.59E-41275No hitNo description
SuperFamilySSF554556.67E-31274IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-16100186IPR002487Transcription factor, K-box
PROSITE profilePS5129713.108102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRGKIEIKK IENVNSRQVT FSKRRGGLLK KANELAVLCD AQVAVIIFSG TGKLYEFASS  60
CMDQILVRYN QNRGSASLQL APIDAPIDAY VDDEPDEPDN QPEEATIDTD SLRHEIEKLH  120
LMHRRMMGKE LDELTYNELH NLEQQLTEGI LSVKERKEKL LLEQMEISKQ QEKKIVQQNE  180
VLLEKIEELR QHARLNSKEN HVIVSKESCL SSSSMHECRS AKEGTSDTSL RLGISPAAIV  240
SEARKMPKLE KSNGSKGAMH VD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-22171171MEF2C
5f28_B8e-22171171MEF2C
5f28_C8e-22171171MEF2C
5f28_D8e-22171171MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075339.11e-103MADS-box transcription factor 23
TrEMBLA0A4D9A4791e-123A0A4D9A479_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-52AGAMOUS-like 15