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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005335-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 262aa MW: 29563.7 Da PI: 6.323 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 7.9e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr g+lKKA+EL vLCda+vaviifs tgklye++s SMil_00005335-RA_Salv 9 KKIENVNSRQVTFSKRRGGLLKKANELAVLCDAQVAVIIFSGTGKLYEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 65.2 | 2.4e-22 | 99 | 188 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ e+ + + + L+ eie+L +R+++G++L++L+++eL++LeqqL +++ +++++K++llleq+e ++++ek++ ++n+ L +k+ SMil_00005335-RA_Salv 99 DNQPEEATIDTDSLRHEIEKLHLMHRRMMGKELDELTYNELHNLEQQLTEGILSVKERKEKLLLEQMEISKQQEKKIVQQNEVLLEKI 186 667788888999***************************************************************************9 PP K-box 99 ee 100 ee SMil_00005335-RA_Salv 187 EE 188 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.567 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.59E-41 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 6.67E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-16 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.108 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRGKIEIKK IENVNSRQVT FSKRRGGLLK KANELAVLCD AQVAVIIFSG TGKLYEFASS 60 CMDQILVRYN QNRGSASLQL APIDAPIDAY VDDEPDEPDN QPEEATIDTD SLRHEIEKLH 120 LMHRRMMGKE LDELTYNELH NLEQQLTEGI LSVKERKEKL LLEQMEISKQ QEKKIVQQNE 180 VLLEKIEELR QHARLNSKEN HVIVSKESCL SSSSMHECRS AKEGTSDTSL RLGISPAAIV 240 SEARKMPKLE KSNGSKGAMH VD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-22 | 1 | 71 | 1 | 71 | MEF2C |
5f28_B | 8e-22 | 1 | 71 | 1 | 71 | MEF2C |
5f28_C | 8e-22 | 1 | 71 | 1 | 71 | MEF2C |
5f28_D | 8e-22 | 1 | 71 | 1 | 71 | MEF2C |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075339.1 | 1e-103 | MADS-box transcription factor 23 | ||||
TrEMBL | A0A4D9A479 | 1e-123 | A0A4D9A479_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 2e-52 | AGAMOUS-like 15 |