PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004943-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28789.8 Da    PI: 8.2277
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004943-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.4e-301059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  SMil_00004943-RA_Salv 10 RIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                           8***********************************************96 PP
2K-box109.14.9e-36801746100
                  K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                             +++e +  ++++ e++kLk++ie Lqr++Rh++GedL+s++lk++q+LeqqL+++lk+iRs+Kn+ll+++i++lq+kek++qe+n++
  SMil_00004943-RA_Salv  80 LVANEPQSPANWNLEHSKLKARIELLQRNHRHYMGEDLDSMNLKDIQNLEQQLDTALKNIRSRKNQLLFDSISDLQQKEKAIQEQNTM 167
                            5556677789****************************************************************************** PP

                  K-box  94 Lrkklee 100
                            L+k+++e
  SMil_00004943-RA_Salv 168 LSKQIKE 174
                            ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.31161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-34291IPR002100Transcription factor, MADS-box
CDDcd002655.29E-41274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.41388178IPR002487Transcription factor, K-box
PfamPF014867.1E-3088172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGKVQLRR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
SCMDRILEKY ERYSFAERQL VANEPQSPAN WNLEHSKLKA RIELLQRNHR HYMGEDLDSM  120
NLKDIQNLEQ QLDTALKNIR SRKNQLLFDS ISDLQQKEKA IQEQNTMLSK QIKEKEQEMA  180
QQPWDQQHHS HRAPQHPPPP PPFMMAPQFP CLNMGGGYNE GEAMEARRNE LDLTLDSLYS  240
CNLGCFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-23174173Myocyte-specific enhancer factor 2B
1tqe_Q5e-23174173Myocyte-specific enhancer factor 2B
1tqe_R5e-23174173Myocyte-specific enhancer factor 2B
1tqe_S5e-23174173Myocyte-specific enhancer factor 2B
6c9l_A5e-23174173Myocyte-specific enhancer factor 2B
6c9l_B5e-23174173Myocyte-specific enhancer factor 2B
6c9l_C5e-23174173Myocyte-specific enhancer factor 2B
6c9l_D5e-23174173Myocyte-specific enhancer factor 2B
6c9l_E5e-23174173Myocyte-specific enhancer factor 2B
6c9l_F5e-23174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512051.21e-131truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-126AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A4D9BP491e-161A0A4D9BP49_SALSN; MADS-box transcription factor, plant
STRINGMigut.E00037.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-113MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]