PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004943-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28789.8 Da PI: 8.2277 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.5 | 2.4e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ SMil_00004943-RA_Salv 10 RIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59 8***********************************************96 PP | |||||||
2 | K-box | 109.1 | 4.9e-36 | 80 | 174 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +++e + ++++ e++kLk++ie Lqr++Rh++GedL+s++lk++q+LeqqL+++lk+iRs+Kn+ll+++i++lq+kek++qe+n++ SMil_00004943-RA_Salv 80 LVANEPQSPANWNLEHSKLKARIELLQRNHRHYMGEDLDSMNLKDIQNLEQQLDTALKNIRSRKNQLLFDSISDLQQKEKAIQEQNTM 167 5556677789****************************************************************************** PP K-box 94 Lrkklee 100 L+k+++e SMil_00004943-RA_Salv 168 LSKQIKE 174 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.31 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-34 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.29E-41 | 2 | 74 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 16.413 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.1E-30 | 88 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGRGKVQLRR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD 60 SCMDRILEKY ERYSFAERQL VANEPQSPAN WNLEHSKLKA RIELLQRNHR HYMGEDLDSM 120 NLKDIQNLEQ QLDTALKNIR SRKNQLLFDS ISDLQQKEKA IQEQNTMLSK QIKEKEQEMA 180 QQPWDQQHHS HRAPQHPPPP PPFMMAPQFP CLNMGGGYNE GEAMEARRNE LDLTLDSLYS 240 CNLGCFAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002512051.2 | 1e-131 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-126 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A4D9BP49 | 1e-161 | A0A4D9BP49_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.E00037.1.p | 1e-130 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-113 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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