PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004711-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18669.4 Da PI: 8.06 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56 | 5.1e-18 | 17 | 62 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ie + + tfskRr+g++KK +ELS LCda+v +++fs+tgk + SMil_00004711-RA_Salv 17 KIEKENDCYATFSKRRQGLFKKGSELSSLCDADVGLLVFSPTGKPF 62 5788888899*********************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-25 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.413 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.24E-23 | 9 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-21 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDEKRTTKGR QKIAIAKIEK ENDCYATFSK RRQGLFKKGS ELSSLCDADV GLLVFSPTGK 60 PFSFFHPSME AVVSRLGSGG AHRDDASRLL EAFSRTRVLQ LNQMIDTIGE KLDDEVEREK 120 ELERERGACQ KWWEMPLENL DKEQVEQLMV SMRNLQLMLR TR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827730.1 | 6e-55 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A4D9BXB2 | 2e-80 | A0A4D9BXB2_SALSN; Uncharacterized protein | ||||
STRING | Migut.D02159.1.p | 2e-54 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-27 | AGAMOUS-like 61 |