PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002641-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 429aa    MW: 47581.2 Da    PI: 8.7806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002641-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l+ ++ q+G+g +W + ++++g++R++k+c++rw++yl
  SMil_00002641-RA_Salv 14 KGPWSPEEDFKLKSYIDQFGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding38.62.6e-1269111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  SMil_00002641-RA_Salv  69 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                            569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.666962IPR017930Myb domain
SuperFamilySSF466896.13E-2611109IPR009057Homeodomain-like
SMARTSM007172.4E-111364IPR001005SANT/Myb domain
PfamPF002493.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-241569IPR009057Homeodomain-like
CDDcd001671.72E-81662No hitNo description
PROSITE profilePS5129422.10963117IPR017930Myb domain
SMARTSM007172.3E-1167115IPR001005SANT/Myb domain
PfamPF002497.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2370117IPR009057Homeodomain-like
CDDcd001672.57E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDFKLKSYID QFGTGNNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
HRKPAPIPGQ EAAGEDAFDL YNLSSSALER LQLHMQLQSL QNPLSLFNNH LQQKMIQTLD  180
SLNPHQLIAP PAFGQAPMAE QINPLLLDEK SCGFAAEENL QPVGDDEFDC FKEMGGVERE  240
NLAWWCNEFE VKSTSSSSWD STAVIDHQIY GDYDMVLRDC DGKIVAAAAY RVGRTETLLM  300
GELHAPLLAV HVVSDVSKGL DSLCDEMFAA FAPAKEHIVF NFRRPRGTSA PPRSRPAAAR  360
PTTPRTRPAR NPTAGAAASS LPAPSCARTR TLWRLPRSSS RGLARFGIPS RCSAASRSPP  420
SPAAVGWLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594140.0KF059414.1 Salvia miltiorrhiza MYB-related transcription factor (MYB60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079436.11e-113transcription factor MYB36-like
TrEMBLA0A059PRT60.0A0A059PRT6_SALMI; MYB-related transcription factor
STRINGGorai.009G006700.11e-102(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-85myb domain protein 36