PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001298-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 28180.3 Da PI: 10.178 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.5 | 1.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+++++++sst+kl+ey+s SMil_00001298-RA_Salv 9 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 81.1 | 2.6e-27 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 yqk+ +l+++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L ++++ +L +++e+slk iR+kK++ ++ +i++++kk ++++ SMil_00001298-RA_Salv 71 YQKTVRADLWSSHYEKMQEHLKKLKEINRNLKKEIRQRMGESLNDLGYEQMVNLIENMETSLKVIREKKYKAITGKIDTSKKKLRNVE 158 77788888******************************************************************************** PP K-box 89 eenkaLrkkle 99 +++ L +++ SMil_00001298-RA_Salv 159 VIHRGLVLQFD 169 ***99987775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.726 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.71E-36 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 7.6E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-34 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.8E-16 | 82 | 165 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.449 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKISILMISS TQKLHEYISP 60 TITTKQIFDE YQKTVRADLW SSHYEKMQEH LKKLKEINRN LKKEIRQRMG ESLNDLGYEQ 120 MVNLIENMET SLKVIREKKY KAITGKIDTS KKKLRNVEVI HRGLVLQFDA RHEDPHYGLV 180 ENEGDYNSML GFQHGGPRII AVRLQPNHHH HPHHHHHHHH HHPSLHSGTG ASDLTTFALL 240 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 8e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 8e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 8e-16 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY524016 | 0.0 | AY524016.1 Salvia coccinea deficiens (DEF) mRNA, DEFB2 paralog, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001297059.1 | 1e-135 | uncharacterized protein LOC105963010 | ||||
Swissprot | P23706 | 1e-137 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A2D0USD5 | 1e-160 | A0A2D0USD5_SALMI; MADS box transcription factor | ||||
STRING | Migut.N03130.1.p | 1e-129 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2314 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-88 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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