PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001298-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 28180.3 Da    PI: 10.178
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001298-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.7e-28959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien++nrqvt+skRrng++KKA+EL vLCda+++++++sst+kl+ey+s
  SMil_00001298-RA_Salv  9 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYIS 59
                           68***********************************************86 PP
2K-box81.12.6e-2771169199
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            yqk+   +l+++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L ++++ +L +++e+slk iR+kK++ ++ +i++++kk ++++
  SMil_00001298-RA_Salv  71 YQKTVRADLWSSHYEKMQEHLKKLKEINRNLKKEIRQRMGESLNDLGYEQMVNLIENMETSLKVIREKKYKAITGKIDTSKKKLRNVE 158
                            77788888******************************************************************************** PP

                  K-box  89 eenkaLrkkle 99 
                             +++ L  +++
  SMil_00001298-RA_Salv 159 VIHRGLVLQFD 169
                            ***99987775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.726161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.71E-36280No hitNo description
PRINTSPR004047.6E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-34395IPR002100Transcription factor, MADS-box
PfamPF003192.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-273859IPR002100Transcription factor, MADS-box
PfamPF014869.8E-1682165IPR002487Transcription factor, K-box
PROSITE profilePS5129714.44984174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKISILMISS TQKLHEYISP  60
TITTKQIFDE YQKTVRADLW SSHYEKMQEH LKKLKEINRN LKKEIRQRMG ESLNDLGYEQ  120
MVNLIENMET SLKVIREKKY KAITGKIDTS KKKLRNVEVI HRGLVLQFDA RHEDPHYGLV  180
ENEGDYNSML GFQHGGPRII AVRLQPNHHH HPHHHHHHHH HHPSLHSGTG ASDLTTFALL  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16159159MEF2C
5f28_B8e-16159159MEF2C
5f28_C8e-16159159MEF2C
5f28_D8e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5240160.0AY524016.1 Salvia coccinea deficiens (DEF) mRNA, DEFB2 paralog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001297059.11e-135uncharacterized protein LOC105963010
SwissprotP237061e-137DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A2D0USD51e-160A0A2D0USD5_SALMI; MADS box transcription factor
STRINGMigut.N03130.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]