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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001114-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 25283.2 Da PI: 7.3248 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.6 | 2.2e-30 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+SvLCda v+viif+++gk++e++s SMil_00001114-RA_Salv 11 KRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFANSGKMHEFCS 61 79***********************************************96 PP | |||||||
2 | K-box | 71.4 | 2.7e-24 | 73 | 170 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqR.hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 y+k sgk+l++ak+e+l++e++++kke++++q e+R hl+Ged+++L +keL+ Le++Le+++++ ++k++e+++++ ++ ++e+e+ SMil_00001114-RA_Salv 73 YHKLSGKRLWDAKHEHLDNEINRIKKENDSMQIELRlHLKGEDISTLGFKELMVLEEALENGITTLKAKQMEFVRMMRKHNEMMEEEN 160 7899****************************87776*************************************************** PP K-box 88 qeenkaLrkk 97 q+ +Lr++ SMil_00001114-RA_Salv 161 QNLLFKLRQM 170 *****99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.4E-41 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.226 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.09E-43 | 4 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-36 | 4 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-28 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-28 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-28 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-13 | 85 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.103 | 86 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
LKMGRGKIEI KRIENSSNRQ VTYSKRRNGI MKKAKEISVL CDAHVSVIIF ANSGKMHEFC 60 SPSTTLVDML DQYHKLSGKR LWDAKHEHLD NEINRIKKEN DSMQIELRLH LKGEDISTLG 120 FKELMVLEEA LENGITTLKA KQMEFVRMMR KHNEMMEEEN QNLLFKLRQM HLDPMDDNVM 180 ETQGVYDHQG VADYEQQMPF AFRVQPMQPN LQERF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-16 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 8e-16 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 8e-16 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 8e-16 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ853421 | 0.0 | HQ853421.1 Salvia coccinea MADS box transcription factor (GLO1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081947.1 | 1e-149 | floral homeotic protein GLOBOSA | ||||
Swissprot | Q03378 | 1e-141 | GLOB_ANTMA; Floral homeotic protein GLOBOSA | ||||
TrEMBL | A0A1B0UHK1 | 1e-147 | A0A1B0UHK1_CATSE; PISTILLATA-Like protein | ||||
STRING | Migut.A00326.1.p | 1e-144 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4680 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 9e-77 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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