PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001114-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 25283.2 Da    PI: 7.3248
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001114-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.2e-301161151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien+snrqvt+skRrngi+KKA+E+SvLCda v+viif+++gk++e++s
  SMil_00001114-RA_Salv 11 KRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFANSGKMHEFCS 61
                           79***********************************************96 PP
2K-box71.42.7e-2473170197
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqR.hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                            y+k sgk+l++ak+e+l++e++++kke++++q e+R hl+Ged+++L +keL+ Le++Le+++++ ++k++e+++++ ++  ++e+e+
  SMil_00001114-RA_Salv  73 YHKLSGKRLWDAKHEHLDNEINRIKKENDSMQIELRlHLKGEDISTLGFKELMVLEEALENGITTLKAKQMEFVRMMRKHNEMMEEEN 160
                            7899****************************87776*************************************************** PP

                  K-box  88 qeenkaLrkk 97 
                            q+   +Lr++
  SMil_00001114-RA_Salv 161 QNLLFKLRQM 170
                            *****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-41362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.226363IPR002100Transcription factor, MADS-box
CDDcd002655.09E-43482No hitNo description
SuperFamilySSF554551.96E-36498IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-28525IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PfamPF003194.1E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-282540IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-284061IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1385167IPR002487Transcription factor, K-box
PROSITE profilePS5129712.10386173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
LKMGRGKIEI KRIENSSNRQ VTYSKRRNGI MKKAKEISVL CDAHVSVIIF ANSGKMHEFC  60
SPSTTLVDML DQYHKLSGKR LWDAKHEHLD NEINRIKKEN DSMQIELRLH LKGEDISTLG  120
FKELMVLEEA LENGITTLKA KQMEFVRMMR KHNEMMEEEN QNLLFKLRQM HLDPMDDNVM  180
ETQGVYDHQG VADYEQQMPF AFRVQPMQPN LQERF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-16362160MEF2 CHIMERA
6byy_B8e-16362160MEF2 CHIMERA
6byy_C8e-16362160MEF2 CHIMERA
6byy_D8e-16362160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8534210.0HQ853421.1 Salvia coccinea MADS box transcription factor (GLO1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081947.11e-149floral homeotic protein GLOBOSA
SwissprotQ033781e-141GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLA0A1B0UHK11e-147A0A1B0UHK1_CATSE; PISTILLATA-Like protein
STRINGMigut.A00326.1.p1e-144(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.19e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Tröbner W, et al.
    GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis.
    EMBO J., 1992. 11(13): p. 4693-704
    [PMID:1361166]
  2. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  3. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]