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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000860-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37394.1 Da PI: 8.6958 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.9 | 9.3e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yLkkkv++ +l++ +i+evd+yk++Pw+Lp k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+ SMil_00000860-RA_Salv 15 LPPGFRFHPTDEELVVHYLKKKVASAPLPV-AIIAEVDLYKFDPWELPGKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGT 101 79****************************.88***************7766789********************************* PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl SMil_00000860-RA_Salv 102 DKPVMTGgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 ******867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-65 | 7 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.105 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MESTDSSTGS QQPQLPPGFR FHPTDEELVV HYLKKKVASA PLPVAIIAEV DLYKFDPWEL 60 PGKAIFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVMTGGG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLVDNKPSSK PPGCDFVNKK GSLRLDDWVL CRIYKKNNAQ 180 RPLDQERDDI HDQLMGSINP QTLSMPSVGH HKYLESDHSL YDGMMSDAMN PHLASSKAAL 240 HLLPPHTLKR TINPSLYWND DSSPGPGPGT SPSTKRFLGD TCDGGTRGGA SDDATNSIAT 300 ILSQLPQTPT LQQQQAMLGN LGDGVFGQQP YHQVNWYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098344.1 | 1e-169 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-113 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A2G9HYQ0 | 1e-166 | A0A2G9HYQ0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00864.1.p | 1e-163 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-104 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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