PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000860-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 338aa MW: 37394.1 Da PI: 8.6958

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000860-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.3e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yLkkkv++ +l++ +i+evd+yk++Pw+Lp k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+ SMil_00000860-RA_Salv 15 LPPGFRFHPTDEELVVHYLKKKVASAPLPV-AIIAEVDLYKFDPWELPGKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGT 101 79**************************.88***********7766789***************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl SMil_00000860-RA_Salv 102 DKPVMTGgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 **867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-65	7	177	IPR003441	NAC domain
PROSITE profile	PS51005	62.105	15	176	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009753	Biological Process	response to jasmonic acid
GO:0045995	Biological Process	regulation of embryonic development
GO:0048317	Biological Process	seed morphogenesis
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MESTDSSTGS QQPQLPPGFR FHPTDEELVV HYLKKKVASA PLPVAIIAEV DLYKFDPWEL 60 PGKAIFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVMTGGG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLVDNKPSSK PPGCDFVNKK GSLRLDDWVL CRIYKKNNAQ 180 RPLDQERDDI HDQLMGSINP QTLSMPSVGH HKYLESDHSL YDGMMSDAMN PHLASSKAAL 240 HLLPPHTLKR TINPSLYWND DSSPGPGPGT SPSTKRFLGD TCDGGTRGGA SDDATNSIAT 300 ILSQLPQTPT LQQQQAMLGN LGDGVFGQQP YHQVNWYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-75	1	179	9	171	NAC domain-containing protein 19
3swm_B	2e-75	1	179	9	171	NAC domain-containing protein 19
3swm_C	2e-75	1	179	9	171	NAC domain-containing protein 19
3swm_D	2e-75	1	179	9	171	NAC domain-containing protein 19
3swp_A	2e-75	1	179	9	171	NAC domain-containing protein 19
3swp_B	2e-75	1	179	9	171	NAC domain-containing protein 19
3swp_C	2e-75	1	179	9	171	NAC domain-containing protein 19
3swp_D	2e-75	1	179	9	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00361	DAP	Transfer from AT3G15510	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098344.1	1e-169	NAC transcription factor 56
Swissprot	Q9LD44	1e-113	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2G9HYQ0	1e-166	A0A2G9HYQ0_9LAMI; Uncharacterized protein
STRING	Migut.M00864.1.p	1e-163	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-104	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]