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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000369-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TALE | ||||||||
Protein Properties | Length: 684aa MW: 74648.3 Da PI: 7.2783 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 503 | 535 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gLt +qV++WF N R + SMil_00000369-RA_Salv 503 HPYPTDTDKHMLATQTGLTRNQVSNWFINARVR 535 89*****************************87 PP | |||||||
2 | BELL | 106.5 | 1.8e-34 | 359 | 427 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+ ++kakLl +++eV+krYkqy++q+q+v+ssFe vagl +a+pY+slAlk i++hFrcLk+ i++q+ SMil_00000369-RA_Salv 359 ENLQRKAKLLFMQDEVCKRYKQYHQQMQMVVSSFESVAGLSAATPYVSLALKMIAKHFRCLKNTITDQL 427 7789**************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.4E-42 | 264 | 425 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-40 | 269 | 424 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.71 | 476 | 539 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.32E-11 | 479 | 540 | No hit | No description |
SMART | SM00389 | 2.2E-8 | 479 | 543 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-17 | 481 | 545 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-28 | 482 | 543 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.0E-18 | 496 | 535 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 684 aa Download sequence Send to blast |
LSEREHMLRS VGALPGDDQF LCEPTAQGRL DGGRETGPLS ASFSPSATVS SSDPQYFSTC 60 DWVANHSSIY ANPISALDVK PNYLGYDQDM NGAASSLYQN ALQDLVTSSN NVRSFGLEFA 120 SLRHKSSGEA GHGPWVVGGS ELMLLPDQMR LKTQSGLITR PVDGCSQWSG ELEFAAPKDL 180 DRDHSNTQAL SLSLSSVPSP KVHEAQITER DFQTRDVCGS TNVQDSRIWK PELPSPNQNM 240 SAGSRVLGAQ ASTHRNPGPL GPFTGYATIL RSSRFLRPAQ QLLEDLCCIA GTKEVEACDV 300 SDEIMEEVRV SSEGASNNAE HAMAGNNSGG LSSFVYNGSS DKSRDAGGTS CSTDARRPEN 360 LQRKAKLLFM QDEVCKRYKQ YHQQMQMVVS SFESVAGLSA ATPYVSLALK MIAKHFRCLK 420 NTITDQLKSI KNALRDEFSS PSAGAGGNKG DANASVLKFF DQGFQKQKGT GILEGQHIWR 480 PQRGLPERAV SILRAWLFDH FLHPYPTDTD KHMLATQTGL TRNQVSNWFI NARVRVWKPM 540 VEEIHMLETK GSDNSGKSSN GKTADGGCAQ ADDSSQRLRT RAIPDKQVEC SSFVPPGQEG 600 DRSKASPWGQ EKRSRIEYHV PSSVDGTLMG FVPSHRNGIE MGGIGSVSLT LGLRQSPEGG 660 QRPAMQQERH MRHYGGQIIR DFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 9e-17 | 485 | 543 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-17 | 485 | 543 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 6e-17 | 485 | 542 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-17 | 485 | 542 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 8e-17 | 485 | 543 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 8e-17 | 485 | 543 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089262.1 | 0.0 | uncharacterized protein LOC105170277 | ||||
TrEMBL | A0A4D9AWQ3 | 0.0 | A0A4D9AWQ3_SALSN; Uncharacterized protein | ||||
STRING | Migut.D02248.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8720 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 5e-85 | BEL1-like homeodomain 8 |