PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10379.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 326aa    MW: 37112.4 Da    PI: 4.5922
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10379.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-114478237
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                             ++W t+E++ll++avk++G  +W+++a+++  +Rt 
  Rsa1.0_10379.1_g00001.1 44 QAWGTWEELLLACAVKRHGFCDWDSVASEVR-TRTS 78
                             79*****************************.**96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-53598IPR009057Homeodomain-like
SuperFamilySSF466893.1E-63898IPR009057Homeodomain-like
SMARTSM007171.6E-542100IPR001005SANT/Myb domain
PfamPF002492.3E-104479IPR001005SANT/Myb domain
CDDcd001672.65E-74597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTKEEEAASY SMNDDNDYIC SNDDHNIRDQ DDNNNNTKPK HESQAWGTWE ELLLACAVKR  60
HGFCDWDSVA SEVRTRTSTS SPVFISPDSC RLKYRDLNRR FKEPTAAEEE EGGNDIPWLE  120
ELRSLRVAEL RREVQEYDVS ILYGISILRL FSNLNDGSEF FFVFRFLRSL QLKVKRLEEE  180
RDGSEKLDLE EEERKGERSE NDGGEKAVST AEESDRENRS MNESNSTGAG EKTVGGGDEP  240
SRTRGDDLDP DPVNTAEEGS EASQSGELGE SGTSGRKWKR KRRKDGDGEI RSAASKSQPL  300
IRLLDLIRSH PRGSLFERRV RSQDLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275283RKWKRKRRK
2275284RKWKRKRRKD
3278283KRKRRK
4279284RKRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10379.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464485.10.0PREDICTED: uncharacterized protein LOC108835759
TrEMBLA0A397ZD381e-132A0A397ZD38_BRACM; Uncharacterized protein
STRINGBo4g021680.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-83DNA-binding bromodomain-containing protein