PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_06323.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 195aa MW: 20611.9 Da PI: 8.0168

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_06323.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.3	1.1e-35	26	83	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l+cprC+s tkfCyynny+l qPryfCk+CrryWt+GG+lr+vPvGgg+r++ ++ Rsa1.0_06323.1_g00001.1 26 EPLPCPRCNSVITKFCYYNNYNLLQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSSK 83 6789*************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	26	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	27	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.941	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MPSESKPARV QGSTSTAAYP PPNMAEPLPC PRCNSVITKF CYYNNYNLLQ PRYFCKSCRR 60 YWTQGGTLRD VPVGGGTRRS SSKRNRSFSS SSCSASLITM SQGTVTTEAK GSTVNSGHGS 120 FASLLNEQSD GAAFLALGSG SDGLDYEFGC RYGYGLEDMS IGYLGGGFGG EIPVVNGGDT 180 WQIGEIGGKS GDSLI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_06323.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449600.1	1e-141	PREDICTED: dof zinc finger protein DOF1.6-like
Swissprot	Q9SX97	3e-62	DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBL	A0A078FVB9	3e-94	A0A078FVB9_BRANA; BnaA08g03730D protein
STRING	Bo6g010470.1	3e-87	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9465	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	1e-58	Dof family protein