 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_02906.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 280aa MW: 31322.3 Da PI: 8.7641 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_02906.1_g00002.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 131 | 8.7e-41 | 5 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82
lp+GfrF Pt+ el+++yL+ ++ g + ++ + i+ +d+++veP +Lp+ ++++++++w fF++r++++a+g r++r+t+sgy
Rsa1.0_02906.1_g00002.1 5 LPVGFRFYPTEVELISFYLRIQLGGGHATIYSLIPIIDVFNVEPTQLPNlageRCRGDKEQWLFFVPRQEREARGGRPSRTTNSGY 90
79****************************999**************9656766667888************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
Wkatg+ +v+s +++++g+kkt+vfy g+apkg+kt+W m+ey+
Rsa1.0_02906.1_g00002.1 91 WKATGSPGPVFSPDNRVIGVKKTMVFYIGKAPKGRKTKWKMNEYK 135
********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MVEELPVGFR FYPTEVELIS FYLRIQLGGG HATIYSLIPI IDVFNVEPTQ LPNLAGERCR 60
GDKEQWLFFV PRQEREARGG RPSRTTNSGY WKATGSPGPV FSPDNRVIGV KKTMVFYIGK 120
APKGRKTKWK MNEYKAIDET ASVSTIPKLR HEFSVCRIYI KSGSSRAFDR RPTEGSGTET 180
RLLSNGIEES SRNTRPTSLE TTQSNSEMIA GISQLLERKL PNNGVETSSC ATISTSPETS 240
YSGGGDQVQL PVNVTSTQRI SDMVDGLSQP FWEWDQLNWP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 7e-34 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 7e-34 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 7e-34 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 7e-34 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 7e-34 | 5 | 166 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 7e-34 | 5 | 166 | 17 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL138641 | 3e-86 | AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. |
| GenBank | CP002686 | 3e-86 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
