PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02677.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 229aa    MW: 27024.3 Da    PI: 4.8988
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02677.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.9e-173183456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               +f++eq++ Le  Fe++  +  +++ + A++lgL+ rqV +WFqN+Ra++k
  Rsa1.0_02677.1_g00005.1 31 QKRFSEEQIKSLEVIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 83
                             568*************************************************9 PP
2HD-ZIP_I/II118.53.7e-3831121393
              HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                              ++r+s+eq+k+LE  Fe+e++Lep++Kv++areLglqprqva+WFqn+RAR+ktkqlEk+y+ L+++y++l+++ + ++ke+++L 
  Rsa1.0_02677.1_g00005.1  31 QKRFSEEQIKSLEVIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNILRANYNNLASQFDIMKKEKQALV 116
                              79************************************************************************************ PP

              HD-ZIP_I/II  89 eelke 93 
                              +el++
  Rsa1.0_02677.1_g00005.1 117 SELQR 121
                              *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.02E-171387IPR009057Homeodomain-like
SMARTSM003894.7E-132289IPR001356Homeobox domain
PROSITE profilePS5007116.7142585IPR001356Homeobox domain
CDDcd000861.68E-123086No hitNo description
PfamPF000468.9E-153183IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-173292IPR009057Homeodomain-like
PRINTSPR000312.6E-55665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000312.6E-56581IPR000047Helix-turn-helix motif
PfamPF021837.3E-1685127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEEVDVFNCC FREINSGISM SKKKMKKSNT QKRFSEEQIK SLEVIFESET RLEPRKKVQV  60
ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNILRANYNN LASQFDIMKK EKQALVSELQ  120
RLNEEMQKSK VERRDECCGE QRIALSSTTW SENGKCEPEV RINQEIVLCN DDIKTEYFGF  180
EEESNHEPMN IVEQADDSCL TSSDNWGGFN SDSILDQSSS NYPWWDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02677.1_g00005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0006020.0KT000602.1 Brassica napus note R1 line homeobox-leucine zipper protein (ATHB-12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487242.11e-165PREDICTED: homeobox-leucine zipper protein ATHB-12
SwissprotQ9M2761e-118ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLA0A397ZGR31e-140A0A397ZGR3_BRACM; Uncharacterized protein
STRINGBo4g100070.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-119homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]