PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 277aa MW: 31576.5 Da PI: 5.8

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01376.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66.9	4e-21	134	184	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAa+a+++a+ +l+g Rsa1.0_01376.1_g00003.1 134 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDQAAFRLRG 184 8******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.00E-32	133	192	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.7E-33	133	193	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.355	134	192	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.58E-23	134	194	IPR016177	DNA-binding domain
SMART	SM00380	2.7E-37	134	198	IPR001471	AP2/ERF domain
Pfam	PF00847	6.7E-15	134	184	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-10	135	146	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-10	158	174	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MANPREASAL RFIENHLFDE LSPVASDRWM IHESAAAATE SSSDSSPTII FSSLIESEPE 60 IIDLSTPRFI DLSSSPFEFD FKPTYQTGNQ FEPEIQTQSN RKPPLKISVP AKTEWIQFNP 120 QPEVTKPIAD EKKHYRGVRQ RPWGKFAAEI RDPNKRGSRI WLGTFDTAIE AARAYDQAAF 180 RLRGSKAILN FPLEVGKWKT RSDADGEKKR KRDFEDVTVV KKVLKTEQNV NGEETFPFVK 240 SDLTEMYDWD LTGFLNFPLL SPLSPHPSFS YSQLTVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-30	133	195	4	66	ATERF1
3gcc_A	2e-30	133	195	4	66	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01376.1_g00003.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC183493	0.0	AC183493.1 Brassica oleracea Contig B, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454634.1	0.0	PREDICTED: ethylene-responsive transcription factor 5-like
Swissprot	O80341	1e-130	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A078GLD8	1e-171	A0A078GLD8_BRANA; BnaC09g20100D protein
TrEMBL	A0A0D3E774	1e-171	A0A0D3E774_BRAOL; Uncharacterized protein
STRING	Bo9g069410.1	1e-171	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	1e-113	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]