PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01376.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 354aa    MW: 39869.9 Da    PI: 7.4801
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01376.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-17113167256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++k+q   Lee F+++++++ +++  LAkkl++t+rqV vWFqNrRa+ k
  Rsa1.0_01376.1_g00001.1 113 RKKLRLSKNQSAFLEETFKEHNNLNPKQKLALAKKLNMTTRQVEVWFQNRRARTK 167
                              788899***********************************************98 PP
2HD-ZIP_I/II116.51.5e-37113202191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rlsk+q+++LEe+F+e+++L+p++K +la++L++++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke  e
  Rsa1.0_01376.1_g00001.1 113 RKKLRLSKNQSAFLEETFKEHNNLNPKQKLALAKKLNMTTRQVEVWFQNRRARTKLKQTEMDCEYLKRCVEKLTEENRRLQKEAME 198
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr +l
  Rsa1.0_01376.1_g00001.1 199 LR-TL 202
                              *9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.1E-17285IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.2E-1896167IPR009057Homeodomain-like
SuperFamilySSF466893.55E-18102170IPR009057Homeodomain-like
PROSITE profilePS5007116.973109169IPR001356Homeobox domain
SMARTSM003894.5E-16111173IPR001356Homeobox domain
CDDcd000867.77E-16113170No hitNo description
PfamPF000464.2E-15113167IPR001356Homeobox domain
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PfamPF021831.0E-7169202IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-22169212IPR003106Leucine zipper, homeobox-associated
PfamPF130413.4E-11299344IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.964299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-4301335IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMMREEDLGL SLSLGFPQNH NPSSSISNEH HRFPWSQTFA STSDLRKIEV NTLPSTVDCE  60
EEAGVSSPNS TISSTISGRK RSERDHDETT PDRGYSRGTS DEEEDGGGGE TSRKKLRLSK  120
NQSAFLEETF KEHNNLNPKQ KLALAKKLNM TTRQVEVWFQ NRRARTKLKQ TEMDCEYLKR  180
CVEKLTEENR RLQKEAMELR TLKLSPQFYG QLTPPTTLIM CPSCERVAGP SSNHHHNHRP  240
VPINPWAACA GQVAANGLNF EALRPRSKES KDLQQAENHK PGLADEALRR FPEFELCADT  300
VAYNLVISLF AGKGDLDMAK SWMREMGCVG LCPDVMTYTS MINGSLSSLC SRDK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117SRKKLRL
2161169RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01376.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464421.10.0PREDICTED: homeobox-leucine zipper protein HAT2-like
SwissprotP466011e-162HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLV4N3L51e-165V4N3L5_EUTSA; Uncharacterized protein
STRINGXP_006398428.11e-166(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-143Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]