 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_01363.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 485aa MW: 54349.2 Da PI: 5.0312 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_01363.1_g00002.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 56.1 | 1.2e-17 | 31 | 77 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
l+pGfrFhPtdeelv++yLk+kv gk++++ ++i ++diyk+ePwdL
Rsa1.0_01363.1_g00002.1 31 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGDADIYKYEPWDLA 77
579************************999.99**************7 PP
|
| 2 | NAM | 94.2 | 2.1e-29 | 128 | 205 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++k++++ew+f++ dkky +g r nr+t+ gyWkatg+d+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl
Rsa1.0_01363.1_g00002.1 128 RLKTRDQEWFFYCALDKKYGNGARMNRSTNIGYWKATGRDREIRR-DVQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 205
5678999*************************************9.999****************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 485 aa
Download sequence Send
to blast |
MGPDSVAAVE SSPSSSATAP LSTAAVAATA LAPGFRFHPT DEELVSYYLK RKVLGKPVRF 60
DAIGDADIYK YEPWDLAGNE VCSCCYVFGY LKVLSLTPCV FLIPYGFLAK LVLPLWFASV 120
SGHEMFSRLK TRDQEWFFYC ALDKKYGNGA RMNRSTNIGY WKATGRDREI RRDVQLLGMK 180
KTLVFHSGRA PDGLRTNWVM HEYRLLDYET ESNGNLVQDA YVLVKVFHKN NIGPPCGNRY 240
APFMEEEWAD DGVALIPGVV RAEPLPLPNG NHQMDQSESK ELININEPPR EVTPMDIEVN 300
HQNQQLDNAL KPQENNNSNN NHCDEDEKAL KRENAEVDER PPPACAPSPL LQYKRRRQNE 360
SNSKDSSRTT TQDHSSSTAT TLIPSSAAAA TSTAISALLE FSLMDISEKK ENTIASPPTS 420
LPSNEEELND LKKEIHEMSV ERETFKLEMM SAEAMISILQ SRIDALRDEN DELKKMNSDK 480
GQAML
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 1e-35 | 23 | 231 | 12 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 1e-35 | 23 | 231 | 12 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 1e-35 | 23 | 231 | 12 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 1e-35 | 23 | 231 | 12 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 1e-35 | 23 | 231 | 12 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 1e-35 | 23 | 231 | 12 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 1e-35 | 23 | 231 | 12 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 1e-35 | 23 | 231 | 12 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KC966752 | 1e-145 | KC966752.1 Brassica napus NAC transcription factor 50 (NAC50.1) mRNA, complete cds. |
