PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01073.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 316aa MW: 36037.5 Da PI: 9.6027

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01073.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.8	5.3e-20	23	118	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 ffkv ++s+ lv+p f+ ++ ++k+ + +++l de grsW+v+ + + + +r +v++kGW +F++++ L+ gDf+vF+ Rsa1.0_01073.1_g00001.1 23 FFKVY--LPEFNSRELVIPPAFI-NI-LEKPLPNQVVLADEIGRSWNVETKTEDTEERvgvVVFKKGWGKFANDHSLEFGDFLVFS 104 77777..67888899******.44.5567999************88666666788*********************** PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 +dg s+f v++f+k Rsa1.0_01073.1_g00001.1 105 HDGVSRF--SVTIFDK 118 9999999..9*99998 PP
2	B3	40.4	5.2e-13	210	288	9	90
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++++++ +p +f++++g++ ee ++ l de+g++W++k+ + +++r+ + W +F+++++L + ++F+++ rs++ Rsa1.0_01073.1_g00001.1 210 TTGSRRQMDIPTTFLKSNGIEMEE--DIELCDENGKKWRMKIVIHDRGQRF-SPGLWLSFCQSHKLTTSNKCLFEFIVRSNG 288 5688999*********988766..79999*******776666665.5668*****************8754333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	14.353	21	119	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.8E-22	22	121	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-22	22	121	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.3E-18	23	119	IPR003340	B3 DNA binding domain
CDD	cd10017	1.20E-18	23	117	No hit	No description
SMART	SM01019	2.0E-19	23	119	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-16	198	297	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-16	198	295	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.139	202	301	IPR003340	B3 DNA binding domain
CDD	cd10017	1.66E-9	203	298	No hit	No description
SMART	SM01019	1.1E-12	205	301	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-11	210	288	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVETSGKVSS SPSSFYARRD LEFFKVYLPE FNSRELVIPP AFINILEKPL PNQVVLADEI 60 GRSWNVETKT EDTEERVGVV VFKKGWGKFA NDHSLEFGDF LVFSHDGVSR FSVTIFDKNG 120 CRKDLVAVPT RADRSRVAVE KEPVLVKPFA DISTKRCGKS LKRVSVKEEP SGNRVRDPCE 180 MGWVPEKKKL KGFEEPVYKP KNPHFVRNIT TGSRRQMDIP TTFLKSNGIE MEEDIELCDE 240 NGKKWRMKIV IHDRGQRFSP GLWLSFCQSH KLTTSNKCLF EFIVRSNGAC NQVLVRIFGG 300 TMLTTVTRNS YQVLAM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01073.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454825.1	0.0	PREDICTED: putative B3 domain-containing protein At5g66980
Swissprot	Q9FGD2	1e-122	Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBL	A0A397XTT0	1e-177	A0A397XTT0_BRACM; Uncharacterized protein
STRING	Bo9g020470.1	1e-176	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12802	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-117	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]