PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00999.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 328aa    MW: 38013.7 Da    PI: 9.179
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00999.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.54.9e-1819109196
                              EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 
                              ffkv      ++s+ lv+p  f+ ++ g  k+ sk+++l de gr W v+ + + + g  +v+++GW++F++ + L+ gDf++F++
  Rsa1.0_00999.1_g00009.1  19 FFKVY--LPEFSSHELVIPQAFI-NIlG--KPLSKKVVLVDEIGRLWAVETKTEERVGVgVVFKQGWEKFANGHSLEFGDFLLFRY 99 
                              77777..7889999*********.5525..45999****************663333336************************** PP

                              -SSSEE..EEEE CS
                       B3  85 dgrsefelvvkv 96 
                              dg+s+f   v +
  Rsa1.0_00999.1_g00009.1 100 DGDSRF--DVAI 109
                              **9999..4444 PP
2B3391.5e-122213111098
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-..SS.SEE. CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld..gr.sefe 91 
                              ++++++l +p +f++++g++ +e++++ l de+g++W +k+  +k++++++++ + W  F+++++L+    ++F+++  ++ ++ +
  Rsa1.0_00999.1_g00009.1 221 AGSLRQLEIPTTFLKANGIELKEGQDIELCDENGKKWPLKI--EKHDRGHIFSyDLWLCFCESHNLRNPNKCLFEFIvsSDgTCNQ 304
                              678899***********777778889***************..9999997766599*******************65336667777 PP

                              .EEEEE- CS
                       B3  92 lvvkvfr 98 
                               +v++fr
  Rsa1.0_00999.1_g00009.1 305 ILVRIFR 311
                              8888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2214115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.49417113IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-2217115IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-1619110No hitNo description
PfamPF023625.1E-1619109IPR003340B3 DNA binding domain
SMARTSM010191.6E-1619113IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-15208311IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-16208311IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.11212313IPR003340B3 DNA binding domain
CDDcd100175.22E-11213311No hitNo description
SMARTSM010192.6E-11215313IPR003340B3 DNA binding domain
PfamPF023623.6E-10221312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVETSEKVSS PYTRKDLEFF KVYLPEFSSH ELVIPQAFIN ILGKPLSKKV VLVDEIGRLW  60
AVETKTEERV GVGVVFKQGW EKFANGHSLE FGDFLLFRYD GDSRFDVAIY AKDGCKKDLD  120
RFRVSVEVEP VIVKPVGISI KPEPWEGCGK RVMQNRKRVS VREERNVLGE IEPDHRRNTR  180
RKVNRSRDPR EMSWVADKKH QGFEEPVYKP KNPHFVRNIR AGSLRQLEIP TTFLKANGIE  240
LKEGQDIELC DENGKKWPLK IEKHDRGHIF SYDLWLCFCE SHNLRNPNKC LFEFIVSSDG  300
TCNQILVRIF RGTLLTTATK SGYHVLSM
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00999.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440048.10.0PREDICTED: putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-124Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A3P6BQY10.0A0A3P6BQY1_BRACM; Uncharacterized protein
STRINGBra012121.1-P0.0(Brassica rapa)
STRINGBo7g064220.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-121B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]