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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00966.1_g00007.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
C2H2 |
| Protein Properties |
Length: 376aa MW: 42524.2 Da PI: 6.9185 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00966.1_g00007.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16 | 3.3e-05 | 210 | 229 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Rsa1.0_00966.1_g00007.1 210 FSCPVCFKTFNRYNNMQMHM 229
89*****************9 PP
|
| 2 | zf-C2H2 | 15.1 | 6.6e-05 | 294 | 316 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk+F + + ++H +++
Rsa1.0_00966.1_g00007.1 294 FMCRKCGKVFAVRGDWRTHEKNC 316
89*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MTDPYSNFFT GWFKSNPFHH YPNSSTNPSP PPPPSSFFFP HSSNLHRPPP EPTPPPSPPL 60
REALPLLSLS PANKQQHHHD HQIQELPSIS MDVDYDHDHH HQDNHNLDDH DHDVTVALHI 120
GLPSPSPQEM ASLLMMSSSS SSSRPTTHHL EDMNDKKDLD NDYHHGGAGG GEDDDEDSVG 180
GDGGCRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW GHGSQYRKGP 240
ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG 300
KVFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHGAYGI DGFDEEDEPA 360
SEVEQLDNDH ESMQSK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF254447 | 0.0 | AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds. |
| GenBank | BT021089 | 0.0 | BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds. |
