PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00792.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | AP2 | ||||||||
Protein Properties | Length: 631aa MW: 70359.4 Da PI: 8.438 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.2e-12 | 277 | 333 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g rk + g ++ +e+Aa+a++ a++k++g Rsa1.0_00792.1_g00008.1 277 SQYRGVTRHRWTGRYEAHLWDnSFKkEGhSRKGRQ-GGYDMEEKAARAYDLAALKYWG 333 78*******************43334555446666.77******************98 PP | |||||||
2 | AP2 | 46.5 | 9.4e-15 | 376 | 427 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeA +a++ a+ k++g Rsa1.0_00792.1_g00008.1 376 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAGEAYDVAAIKFRG 427 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.48E-18 | 277 | 340 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-14 | 277 | 343 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-9 | 277 | 333 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-11 | 278 | 341 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-19 | 278 | 347 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.99 | 278 | 341 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 279 | 290 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 376 | 436 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.13E-24 | 376 | 437 | No hit | No description |
Pfam | PF00847 | 3.2E-10 | 376 | 427 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-17 | 377 | 435 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-32 | 377 | 441 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.307 | 377 | 435 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 417 | 437 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MKSFCDNDDN DHGNTTNLLG FSLSSNMMKM GGSEGEALYS SSSSSVATSS VPPQLVVSDN 60 SSNYGVCYGS NSAAGDIYSQ MSVMPLRSDG SLCLMEALNR SSHSNHHHHT QVSSPKMEDF 120 FGTHHNNTNH KEAMDLSLDS LFYNTTHEPN NNTNFQEFFS FPQTRNHHEE VSGNYENVPG 180 LTHEGVPLNV GVYGEFQHSL SLSMSPGSQS SCITGPHHHQ TQNHHQISEA LVETSVGFET 240 TMADAKKKKS GKEDVVVVGQ KQIAHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSF 300 KKEGHSRKGR QGGYDMEEKA ARAYDLAALK YWGPSTHTNF SVEIYQKEIE DMKNMTRQEY 360 VAHLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFGT QEEAGEAYDV 420 AAIKFRGTNA VTNFDITRYD VDRIMSSNTL LSGELARRNN NSIVVRNNNG EETTLNAVVD 480 GGSNKEVSGP ERVLSFPAIF SLPQVGPKMF GANVVGNMSS WTTNPNAELK AVSLTLPHMP 540 SQMMEKGIDL DKTSYNSLIM GQLKVGKLSE ARGKRILNRF LDLKQIVLHF LIEDYIFNYK 600 SRRCEAIRKM FFPQTIPAIY KAPPTPSPSP S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00792.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ211969 | 0.0 | DQ211969.1 Brassica napus aintegumenta mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447510.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 0.0 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A078I1S3 | 0.0 | A0A078I1S3_BRANA; BnaA08g15790D protein | ||||
STRING | Bo3g153310.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 0.0 | AP2 family protein |