PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00578.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 850aa    MW: 93026.5 Da    PI: 6.3478
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00578.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-181977357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Rsa1.0_00578.1_g00001.1 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                             5678*****************************************************97 PP
2START184.36.4e-581713792205
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aeea++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W +++++++tl vi  
  Rsa1.0_00578.1_g00001.1 171 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPT-KVAEILKDRQSWLRDCRSVDTLSVIPA 255
                              799*******************************************************.8888888888***************** PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              g  g+++l++++++a+++l++ Rdf+++Ry+ +l++g++v++++S++  +  p+   ss++vRae++pSg+li+p+++g+s +++v
  Rsa1.0_00578.1_g00001.1 256 GngGTIELIYTQMYAPTTLAAaRDFWTLRYSTCLEDGSYVVCERSLTAATGGPTgppSSNFVRAEMRPSGFLIRPCDGGGSILHIV 341
                              999**********************************************99999999***************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                              +hvdl++ ++++++r+l++s+ + ++k++va+l++ ++
  Rsa1.0_00578.1_g00001.1 342 DHVDLDALSVPEVMRPLYESSKILAQKMTVAALRHARQ 379
                              *********************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3211478IPR001356Homeobox domain
SMARTSM003895.7E-151682IPR001356Homeobox domain
SuperFamilySSF466898.55E-171882IPR009057Homeodomain-like
CDDcd000864.09E-161979No hitNo description
PfamPF000466.4E-162077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-182177IPR009057Homeodomain-like
CDDcd146864.45E-671110No hitNo description
PROSITE profilePS5084826.392161362IPR002913START domain
CDDcd088758.91E-74165381No hitNo description
Gene3DG3DSA:3.30.530.205.3E-22169375IPR023393START-like domain
SuperFamilySSF559612.33E-35170382No hitNo description
SMARTSM002342.3E-60170380IPR002913START domain
PfamPF018523.1E-55171379IPR002913START domain
SuperFamilySSF559611.11E-5418500No hitNo description
SuperFamilySSF559611.11E-5532606No hitNo description
PfamPF086703.1E-49704849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE AARLQTVNKK LNAMNKLLME ENDRLQKQVS HLVYENGHMK  120
HQIHTASGTT TDNSCESVVV VSGQQHQHQQ QNPNPQRLQR DANNPAGLLS IAEEALAEFL  180
SKATGTAVDW VQMIGMKPGP DSIGIVAISR NCSGIAARAC GLVSLEPTKV AEILKDRQSW  240
LRDCRSVDTL SVIPAGNGGT IELIYTQMYA PTTLAAARDF WTLRYSTCLE DGSYVVCERS  300
LTAATGGPTG PPSSNFVRAE MRPSGFLIRP CDGGGSILHI VDHVDLDALS VPEVMRPLYE  360
SSKILAQKMT VAALRHARQI AQETSGEVQY GGGRQPAVLR TFSQRLSRGF NDAVNGFVDD  420
GWSPMGSDGG EDITVMINLS PGKFGGSQYS NNSFLPSFGS GVLCAKASML LQNVPPAVLV  480
RFLREHRSEW ADYGVDAYAA ASLRASPFAV PCARAGGFPS NQVILPLAQT VEHEEFLEVV  540
RLEGHAYSPE DMGLARDMYL LQLCSGVDED VVGGCAQLVF APIDESFADD APLLPSGFRV  600
IPLEQKSTPN GASVNRTLDL ASALEGSTRQ AGEADPNGCN FRSVLTIAFQ FTFDNHTRDN  660
VASMARQYVR NIVGSIQRVA LAIAPRPGSC ISPVSAPTSP EALTLVRWIS RSYRVHTGAD  720
LFGSDSQTSG DTLLHQLWSH TDAILCCSMK TNASPIFTFA NQTGLDMLET TLLALQDLTL  780
DKTLDESGRK ALCSEFPKIM QQGYAHLPAG VCASSMGRLV SYEQATVWKV LEDDESNHCL  840
AFMFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00578.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412910.0AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene).
GenBankAY0997910.0AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.
GenBankBT0003350.0BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484893.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A0D3C4620.0A0A0D3C462_BRAOL; Uncharacterized protein
STRINGXP_010504942.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]