PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00424.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 1336aa    MW: 151690 Da    PI: 8.4669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00424.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014203222120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++Cp C k+F+r  n++ H+
  Rsa1.0_00424.1_g00007.1 203 FSCPVCFKTFNRYNNMQMHM 222
                              89*****************9 PP
2zf-C2H213.80.00017287309123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C +CgksF  + + ++H +++
  Rsa1.0_00424.1_g00007.1 287 FMCRKCGKSFAVRGDWRTHEKNC 309
                              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64203230IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-5203222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.38203225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
SMARTSM00355220250282IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.01E-6269307No hitNo description
Gene3DG3DSA:3.30.160.604.6E-5283307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808287307IPR007087Zinc finger, C2H2
SMARTSM0035537287307IPR015880Zinc finger, C2H2-like
SuperFamilySSF562191.29E-5373499IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF566721.67E-207201084No hitNo description
PROSITE profilePS5087820.5817581035IPR000477Reverse transcriptase domain
CDDcd016507.42E-567711035No hitNo description
PfamPF000785.5E-547771035IPR000477Reverse transcriptase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1336 aa     Download sequence    Send to blast
MTDPYSNLFT GWFKPNPFHN YLNSSTNLPP PSPFFLIPYS GDLRRPPPTP PPSPPLREPL  60
PLLSLSPANK QQNHHDLIQE PPSTSMDVDY GHHHQQDDHN LDDDDHDVTV SLRIGLPSPS  120
TRDMTSLLMM SSSSSSSRTT HHHEDMNDKK DLDNDHHHGG AGGGEDDDED SVGGNSGCRI  180
SSLNKGQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR KGTESLRGTQ  240
PTGMLRLPCY CCALGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKSFAVRG  300
DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGNGHGA YGIDGFDEED EPASEMLPGW  360
LYEANYEFSE LGKIWVVWHP SVKVVIIKKS LQMITCEVLL PEATSWILVS IVYAANTEDL  420
RLNLWKEIDE VSIYNCNRML PWIVLEDFNQ TRHPNEHSTA VSQNVDRKTR AFRECLLEAG  480
LDDLNYRGNL FTWWNKNPTK PVAKNSTASL LMSYGKKCFH RLTNEDFLPM ICYNWYSFNV  540
VGSAMFRLAR KLKLLKKEIR AFSKLNYSGI EMRVKEAHEV LIFQQAETLA DPTPTNAALE  600
LEAHRKWLML VKAEEKFFLQ RSRVLWLVNG DCNTAYFHRM LNSRKAINHI HYLITNDGER  660
LESQSGMMAH CIDYFSKLFG GPCEPQMFTQ GDISTLIPFR CSDDQKKALT VRFTRLEIRN  720
AFFSPPKNKT CGPDGYSAEF FCGCWDIVGP EVCDAVKEFF VSGSMLKQWN TTTLVLIPKI  780
TNAASTSDFR PISCLNTIYK VISRLLASRL LPILSQVVSS AQSAFLPGRL IGENILLATD  840
LVIGYNRQSD EPRAMLKVDL RKAFDSVRWD FILAALRAMG IPTRFANWIS ECISTPSFTI  900
AFNGTTGGNF ISTKGLRQGD PLSPYLFVLA MECFSSLLHS RFEAGYIHYH PRTSDLKLSH  960
LMFADDVMIF FDGGSSSLHG VTEALDDFAS WSGLRINPQK SQLFCAGVDE IEAFAMSQYG  1020
YTAGTFPVRY LGLPLMSRKL KINEYEPLLA SLIKRFRAWA ISTFLLPKGC IKKIESLCLR  1080
FLWSGDIERV GQAKVAWETV CLPKAEGGLG LRSLLRWNTT LCLHYIWLLF SEKPSLWAKF  1140
WFDAWTPLVP LIKLVGVAGP RRLRLPLTST VADACSQTGW LLPSPRSEAE LQLHTHLTLI  1200
SLPSQSTVED SYHWLTNGSS GRDYSASATW SDCRPRTTEK DWAKLIWFKG NVPKHAFNMW  1260
TAQLNRLPTR YCTGYLAFKR VFLIGMSFYP GLNAHQIEPL HCSAKLLLKL PYTKYGGKEM  1320
IDSTTTASSR HLLFLH
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00424.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013689051.10.0uncharacterized protein LOC106392819
TrEMBLQ9C6L30.0Q9C6L3_ARATH; Uncharacterized protein F2J7.11
STRINGXP_010436877.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-138C2H2 family protein