PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00344.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 428aa MW: 47146.4 Da PI: 9.6895 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.4 | 8.4e-15 | 350 | 401 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+ + +e ++k+ Rsa1.0_00344.1_g00006.1 350 RRQKRMIKNRESAARSRARKQAYTLELEAEVAQLKEQNEELQRKqVEIMEKQ 401 69*************************************9975404434444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.4E-14 | 346 | 411 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.921 | 348 | 393 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.2E-14 | 350 | 405 | No hit | No description |
CDD | cd14707 | 7.74E-26 | 350 | 404 | No hit | No description |
SuperFamily | SSF57959 | 1.5E-10 | 350 | 401 | No hit | No description |
Pfam | PF00170 | 1.1E-12 | 350 | 406 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 353 | 368 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MGSRFNFVDE AKHPALGAGV PLMRQNSVFS LTFDEFQSSW GGGIGKDFGS MNMDELLKNI 60 WTAEESHSMM ANNNNTSFNN TVVMNNNGGF SVGVGGELAG CGGGLQRQGS LTLPRTISQK 120 RVDDVWKELM KEDDSGDGVG NVGGGASGVP QRQQTLGEMT LEEFLVRAGV VREESQPVER 180 VDNFNGGFFG FGSDAGLVSA RNGFGGPNQP HGGVVRPDLL TTQTQPLQMQ QQQPQKVHQP 240 RELIPKQDVA FPKQTTIAFS NTVDLVNRSQ PLTQEVKPTI LGVRDRPMNN NLLQAVDFKT 300 GVTVAAVSPG SQMSPDLTPK SAMDASLSPV PYMFGRVRKT GAVLEKVIER RQKRMIKNRE 360 SAARSRARKQ AYTLELEAEV AQLKEQNEEL QRKQVEIMEK QKKQLLEPMR QAWGCKRQCL 420 RRTLTGPW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00344.1_g00006.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353408 | 0.0 | AK353408.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-J01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450922.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
Swissprot | Q9M7Q3 | 0.0 | AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
TrEMBL | E4MY11 | 0.0 | E4MY11_EUTHA; mRNA, clone: RTFL01-30-J01 | ||||
TrEMBL | V4MBG2 | 0.0 | V4MBG2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006412286.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34000.2 | 0.0 | abscisic acid responsive elements-binding factor 3 |