PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00320.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 401aa MW: 43566.4 Da PI: 10.2559 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.9 | 9.3e-13 | 323 | 375 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ + Rsa1.0_00320.1_g00008.1 323 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEMQK 375 69***************************************876666655544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.9E-11 | 319 | 384 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.53 | 321 | 372 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-10 | 323 | 376 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.27E-9 | 323 | 372 | No hit | No description |
CDD | cd14707 | 7.32E-24 | 323 | 375 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-12 | 323 | 379 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 326 | 341 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 401 aa Download sequence Send to blast |
MGTHINFNNL GGGGGGSNQM KPTDTAYPLA RQSSLYSLTF DELQSTLGGP GKDFGSMNMD 60 ELLKSIWTAE EAQAMTMNPP SSSSSAAAAA TAVAQPGGGG GIPLQRQGSL TLPRTISQKT 120 VDEVWKCLFT KDGNMVGSSG GESNAPQRQQ TLGEITLEEF LFRAGVVRED NCSQQVGGNS 180 SNNGFYGNNG AAAGGLGFGF GQPNQNNISF NGTIQQQTQQ QFQQQPQQQL QQPRQQLNQP 240 HPQQQQQQHP HQRLPQTIFP KQAFAGNNNN NGLGSFGGGG VTVAAAATSP GTSSAENNSL 300 SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKVN 360 QELQRKQAEM MEMQKNELKE TSKQPWGSKR QCLRRTLTGP W |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00320.1_g00008.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX122894 | 1e-170 | JX122894.1 Brassica napus ABA-responsive element binding factor 4 (ABF4.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018441669.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
Swissprot | Q9M7Q2 | 1e-173 | AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
TrEMBL | A0A0D3ACD0 | 0.0 | A0A0D3ACD0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G6J2 | 0.0 | A0A3P6G6J2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g114840.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19290.1 | 5e-73 | ABRE binding factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|