PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00209.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 194aa    MW: 22575.9 Da    PI: 9.3207
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00209.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.2e-20666257
                             T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             ++R+++t+eql +Lee+++   r+p+a ++++++++l    +++ ++V++WFqN++a++++
  Rsa1.0_00209.1_g00016.1  6 STRWCPTTEQLMILEEMYRTgIRTPNAVQIQQITAHLafygRIEGKNVFYWFQNHKARDRQ 66
                             58*****************99*************************************996 PP
2Wus_type_Homeobox119.11.9e-38567264
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                             a+tRW+Pt+eQ++iLee+y++G+rtPn+ +iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Rsa1.0_00209.1_g00016.1  5 ASTRWCPTTEQLMILEEMYRTGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67
                             589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0022471IPR001356Homeobox domain
CDDcd000862.32E-4767No hitNo description
SuperFamilySSF466897.7E-11766IPR009057Homeodomain-like
PfamPF000462.8E-17766IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-7866IPR009057Homeodomain-like
PROSITE profilePS500719.7661267IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSPVASTRWC PTTEQLMILE EMYRTGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH  60
KARDRQKLRK KLAKQLHQQQ LQQIKLKPPM MSQPLNNIID HNNPYYHNHP RPYDHMSFAC  120
CSQPSPVCLS HQGIGVKAQS KVVNEYYYNK SGPEDMLMQK PTTDQNSSYG RDWMMTIDMG  180
PRPSYPSSPI PCCE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00209.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894321e-166AC189432.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068E07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466212.11e-146PREDICTED: WUSCHEL-related homeobox 3-like
SwissprotQ9SIB47e-85WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A398A5611e-111A0A398A561_BRACM; Uncharacterized protein
STRINGBra000484.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-72WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]