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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
RrC704_p4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 343aa MW: 38405 Da PI: 6.3134 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC704_p4 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 120.7 | 1.4e-37 | 6 | 148 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k................kvkaeekewyfFskrdkkyatgkrknratksgyWk 84
p+GfrF Pt+ el+++yL+ +++g + ++++ i+ +d+++veP +Lp k +++++ ++w fF++r++++a+g r++r+t gyWk
RrC704_p4 6 PVGFRFYPTEVELISFYLRFQLHGGNATIHSLIPILDVFSVEPTQLPsKgvfyvdeylfaelageRCRGDAEQWLFFVPRQEREARGGRPSRTTGLGYWK 105
89***************************999***************5499****99999988876667888**************************** PP
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
atg+ +v+s +++++g+kkt+vfy g+ap+g+kt+W m+ey+
RrC704_p4 106 ATGSPGPVFSPDNRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 148
******************************************7 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MEHEIPVGFR FYPTEVELIS FYLRFQLHGG NATIHSLIPI LDVFSVEPTQ LPSKGVFYVD 60
EYLFAELAGE RCRGDAEQWL FFVPRQEREA RGGRPSRTTG LGYWKATGSP GPVFSPDNRV 120
IGVKKTMVFY IGKAPTGRKT KWKMNEYKGI DEAASVSTIP KLRQEFSVCR IYIKSGSSRA 180
FDRRPTEAYV IERRLPRFGI ETSSRGTATQ SNSEMVDGQS QLRERKLPNN SVETSSYDTF 240
TTSQETSYSG GGDQVQLPVN DTTTIQSIPE MVDGPSQLRA RKLPYNEVKS QSCATVSTSS 300
ETSCSGGGDQ FQMPVNASAT QTISEMVDGL SQPFWEWEQL NWS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 2e-30 | 5 | 179 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 2e-30 | 5 | 179 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 2e-30 | 5 | 179 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 2e-30 | 5 | 179 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 2e-30 | 5 | 179 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 2e-30 | 5 | 179 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 2e-30 | 5 | 179 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 2e-30 | 5 | 179 | 20 | 173 | NAC domain-containing protein 19 |
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