 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC518_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NF-YC |
| Protein Properties |
Length: 183aa MW: 20503 Da PI: 9.0927 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC518_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 44.5 | 3.4e-14 | 83 | 165 | 17 | 99 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
k ++P+ ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++
RrC518_p2 83 KMIRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNDERYEFLADCVPEK 165
45689***************************************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 183 aa
Download sequence Send
to blast |
MVSSKKPNQE KKPSSDGVVV NKAGARNSRS SSGSNSKKKT PKLQAIAKNE PEVHEISESS 60
CSDSDERRKK SNGGGGGVED ANKMIRFPMN RIRRIMRSDN SAPQIMQDAV FLVNKATELF 120
IERFSEEAYE SSVQDKKKFI HYKHLSSVVS NDERYEFLAD CVPEKLKAEV ALEEWERSMT 180
DAG
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229011 | 8e-95 | AK229011.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-31-C07. |
| GenBank | AK229266 | 8e-95 | AK229266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-54-O22. |
| GenBank | AY086815 | 8e-95 | AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence. |
| GenBank | BT025266 | 8e-95 | BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds. |
