PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4504_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 378aa    MW: 43355.1 Da    PI: 8.6825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4504_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-1094118327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + C f++++G C yG +C+F+H+p
  RrC4504_p1  94 VADCYFYLKNGRCGYGLSCRFNHPP 118
                 689********************97 PP
2zf-CCCH36.11.1e-11132156327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + Cr +++tG+C+yG++C+F+H+p
  RrC4504_p1 132 ARDCRQYLQTGQCSYGPKCRFNHSP 156
                 589********************96 PP
3zf-CCCH35.41.9e-11170192527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  C+ +++tG C+yG++C+F+H+p
  RrC4504_p1 170 DCKQYLQTGRCSYGPKCRFNHPP 192
                 5********************97 PP
4zf-CCCH21.83.4e-07202224326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C+ff++ G C yG+ CkF H+
  RrC4504_p1 202 RQNCKFFQK-GSCTYGSGCKFTHS 224
                 568******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-591118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.33891119IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-794118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-595119IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-5129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953129157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6132156IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9132156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6135156IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6165192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915165193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5170192IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9170192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-6171190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267199226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6201224IPR000571Zinc finger, CCCH-type
SMARTSM003560.012201225IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5202224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5205225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
METEDAKETD TRTESTSMEE TEEQDTDLRT RGSYGRTDGR RERDPRSSGE KKVKKLIKNS  60
LLCSVLYHYA KTESTRFSQE NATQTSEYPA RTGVADCYFY LKNGRCGYGL SCRFNHPPMR  120
HEMVQPSPYP GARDCRQYLQ TGQCSYGPKC RFNHSPAPVL PERVSLGAID CKQYLQTGRC  180
SYGPKCRFNH PPAPVLSQWV SRQNCKFFQK GSCTYGSGCK FTHSMSGDGA ETMRQDTPRG  240
KKRHGANSSA RPWKRERQQA HDLEEQKQKK REVENLRIGP SVQSGEGGIQ TEQRLEEIPE  300
NPNVNAQENL QEQADMERQN REAQEKAQEE RRQQIDNARR ESRLRLERMK PRALTSNVDQ  360
LREALPDIGI DRKEGDGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486806.10.0PREDICTED: zinc finger CCCH domain-containing protein 42-like
TrEMBLA0A0D3D6051e-174A0A0D3D605_BRAOL; Uncharacterized protein
STRINGBo7g045330.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-21C3H family protein