PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 286aa MW: 32873 Da PI: 8.4379

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC391_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165	2.7e-51	6	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtd+el+ +yL++kv+g ++el evi+ +d+yk++Pw+Lp + + +++ ew+fF++rdkky++g r+nratk+gyWk tgkd++++++ +g RrC391_p3 6 LPPGFRFHPTDQELIGYYLTRKVKGIEIEL-EVIPVIDLYKFDPWELPdQsFLPNRDMEWFFFCPRDKKYPNGLRSNRATKAGYWKPTGKDRKITCRsSG 104 79**************************.99**********96335566888*********************************99677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 l+g +ktLvfy+grap g +t+W+mheyrl RrC391_p3 105 VLTGYRKTLVFYEGRAPLGARTNWFMHEYRL 135 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-60	2	158	IPR003441	NAC domain
PROSITE profile	PS51005	57.946	6	158	IPR003441	NAC domain
Pfam	PF02365	3.9E-28	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGSYCLPPGF RFHPTDQELI GYYLTRKVKG IEIELEVIPV IDLYKFDPWE LPDQSFLPNR 60 DMEWFFFCPR DKKYPNGLRS NRATKAGYWK PTGKDRKITC RSSGVLTGYR KTLVFYEGRA 120 PLGARTNWFM HEYRLNDDDL SQSPNVKGAF ALCRIVKKSQ LKTKTLKNKN EQAISSGCSS 180 LATSPCRDEM TQLQSFKPYS TTNKSSTSIW QSTDFILDSS KDYPHTQGVS EFPNLHFPVN 240 KANHHVGFSE SSYLNVDQDI DQSMPTGYWP NYEYDQTGSF ACSNLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	6	158	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	6	158	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	6	158	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	6	158	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	6	158	20	168	NAC domain-containing protein 19
3swm_B	2e-49	6	158	20	168	NAC domain-containing protein 19
3swm_C	2e-49	6	158	20	168	NAC domain-containing protein 19
3swm_D	2e-49	6	158	20	168	NAC domain-containing protein 19
3swp_A	2e-49	6	158	20	168	NAC domain-containing protein 19
3swp_B	2e-49	6	158	20	168	NAC domain-containing protein 19
3swp_C	2e-49	6	158	20	168	NAC domain-containing protein 19
3swp_D	2e-49	6	158	20	168	NAC domain-containing protein 19
4dul_A	2e-49	6	158	17	165	NAC domain-containing protein 19
4dul_B	2e-49	6	158	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470550.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	O49697	1e-134	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A3P6EUP0	1e-174	A0A3P6EUP0_BRAOL; Uncharacterized protein
STRING	Bo1g019130.1	1e-174	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-136	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]