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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3401_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ARF | ||||||||
Protein Properties | Length: 868aa MW: 96415.6 Da PI: 6.0746 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.1 | 1.9e-24 | 152 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l RrC3401_p2 152 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQL 246 99*********************999****996444444..8************************************************..4577778 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ RrC3401_p2 247 MVGVRRA 253 *****97 PP | |||||||
2 | Auxin_resp | 109.4 | 3.7e-36 | 279 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F +++nPra+++eFv++++k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sd+dp+rW++SkWr+L+ RrC3401_p2 279 AAHATANRTPFLIFFNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDMDPLRWSGSKWRNLQ 362 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-45 | 142 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-40 | 146 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.27E-23 | 151 | 252 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 152 | 254 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-25 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-22 | 152 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.8E-31 | 279 | 362 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.427 | 759 | 843 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.81E-7 | 773 | 837 | No hit | No description |
Pfam | PF02309 | 2.6E-6 | 803 | 843 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 868 aa Download sequence Send to blast |
MMTFVEDKMK TNGFANGGTK TTSQSTLLEE MKLLKDQSGT RKQVINSELW HACAGPLVCL 60 PQVGSLVYYF SQGHSEQVAV STRRSATTQV PNYPNLPSQL MCQVHNVTLH ADKDSDEIYA 120 QMSLQPVHSE RDVLPVPDFG LLNRSKHPAE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP 180 LDYTAQPPTQ ELVVRDLHEN TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR 240 DEKSQLMVGV RRANRHQQTA LPSSVLSADS MHIGVLAAAA HATANRTPFL IFFNPRACPA 300 EFVIPLAKYR KAICGSQLSV GMRFGMMFET EDSGKRRYMG TIVGISDMDP LRWSGSKWRN 360 LQVEWDEPGC NDKPTRVSPW DIETPESLFI FPSLTSGLKR QLHPSYFAGE TEWGSLIKRP 420 LIRVSDSTNG ILPYASFPNM ASEQLMKMMM RPHNNNNNQI ATSSFMSEML QQNVLMGHGG 480 GLLGDMNMQQ PMVMRQKPEM VQQPESKITL NPSTAANTTG QEQNLSQNMT APPKSEHYGN 540 EQKSVEQASQ VRTVTVFNED ALSPLQAEPC PDTSQQIYPP QSDPINGFSF LETEELTSFH 600 SLAGSSLLSS QEDSSAVVLP DSTNSSLFHD VWDNQLSGLK FDQFSPLMQQ DLYGCQDSTT 660 SNILDPPPLS NTVLDDFCAI QNHHPSDCLV GNSNTRFAQD VQSSQITTAS FADSKAFSRQ 720 DNSGGTTVTS SSNVDFDDST LLQQNSKGSW QKLATPRVRT YTKVQKTGSV GRSIDVTSFR 780 DYKELKTAIE CMFGLEGLLT RPQSSGWKLV YVDYESDVLL VGDDPWEEFV GCVRCIKILS 840 PVEVEQMSEE GMKLLNSACI TDLKTSAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 2 | 387 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979465 | 0.0 | JN979465.1 Brassica rapa subsp. pekinensis auxin response factor 5-1 (ARF5-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439086.1 | 0.0 | PREDICTED: auxin response factor 5-like isoform X1 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A078GW89 | 0.0 | A0A078GW89_BRANA; Auxin response factor | ||||
TrEMBL | A0A397YXN3 | 0.0 | A0A397YXN3_BRACM; Auxin response factor | ||||
STRING | Bo5g027930.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |