PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2542_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 371aa    MW: 41026.6 Da    PI: 7.793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2542_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001173195123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C ++Fs+   L  H  +H
  RrC2542_p5 173 YQCKTCERTFSSFQALGGHRASH 195
                 9***********99999998887 PP
2zf-C2H213.10.00029252274123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  RrC2542_p5 252 HECGICGAEFTSGQALGGHMRRH 274
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.16E-7172195No hitNo description
PfamPF139123.6E-11172197IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762173200IPR007087Zinc finger, C2H2
SMARTSM003550.08173195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576675.16E-7247274No hitNo description
Gene3DG3DSA:3.30.160.607.5E-4250276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11251276IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93252276IPR007087Zinc finger, C2H2
SMARTSM003550.047252274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSEDHGTCDV VLWDKTHSQR NEIGDSSLKE QSLILKGKRT KRQRPQSPVP FSISPPIVSC  60
HTRDVEEEYT DLDSKENALG NNVENQKKDG VITSSSSSAS WSSNNNQALK AEEDEEDLDI  120
ASCLILLSQG HSLPQLKIPN QETNNNNTYR ISSKRFLETS SANGAGKAGY YVYQCKTCER  180
TFSSFQALGG HRASHKKPKA TSHNSNLDHI KKNIYENDSL VTTTTIYNNN KNNNKDNRSL  240
VVYGKAGNNK VHECGICGAE FTSGQALGGH MRRHRGAVVV APTVTVALAV ANTELSLSSM  300
SFDQKSTKIA KKTVVSLDLD LNLPAPEDEN RINGFSLSLK QKHEQEHQQT KQRDEPKCLV  360
LSPPTLVDCH Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893880.0AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469616.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D3AHR90.0A0A0D3AHR9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D7J30.0A0A3P6D7J3_BRAOL; Uncharacterized protein
STRINGBo2g006530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-137C2H2 family protein