PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1971_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 657aa    MW: 71392 Da    PI: 6.7124
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1971_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.91.1e-28216269155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  RrC1971_p1 216 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269
                 79*******************.********************************7 PP
2Response_reg74.93.1e-25321401109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+   y +v+ +  +e al ll++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ +l+ +  Ga 
    RrC1971_p1  32 VLVVDDDPTCLMILERMLRTCLY-RVTKCNRAELALSLLRQNKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKAVVLKGVTHGAV 126
                   89*********************.***************888889**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
    RrC1971_p1 127 DYLIKPVRIEALKN 140
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.4E-19112649IPR017053Response regulator B-type, plant
SuperFamilySSF521722.28E-3529171IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-4029166No hitNo description
SMARTSM004481.9E-2930142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.27331146IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2232140IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.00E-2733145No hitNo description
PROSITE profilePS5129411.323213272IPR017930Myb domain
SuperFamilySSF466897.17E-20214273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-30215274IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24216269IPR006447Myb domain, plants
PfamPF002491.0E-8218268IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MLNPGQGRGP DSAGVAGGVS SNSDPFPAGL RVLVVDDDPT CLMILERMLR TCLYRVTKCN  60
RAELALSLLR QNKNGFDIVI SDVHMPDMDG FKLLEHVGLE MDLPVIMMSA DDSKAVVLKG  120
VTHGAVDYLI KPVRIEALKN IWQHVVRKKR NEWNVSEHSG SVEETTGERQ QQRDDGGDNN  180
SSSANNEGSW RSSRKRKEGE VDEQGDDKED TSSLKKPRVV WSVELHQQFV AAVNQLGVDK  240
AVPKKILEMM NVPGLTRENV ASHLQKYRIY LRRLGGVSHQ HQGNMNHSFM TGQDPSFSPL  300
STLNGFDLQA LAAAGQLPAQ SLAQLQAAGL ARPSSLTKPG ISVDQRGIFS FESPKIRHGQ  360
MMMNSGGGGG NKQMNLLHGV PMGMEPRQFA GGGHMRLQQQ MSGGGRVAGQ NVQSSGMMMP  420
VGGGTSMLQS LGQQQQQVML SSSVPRRSEL TESSSSCRVL PAAPTHSVVF NNFSSELPRN  480
SFPLASAPGI SVSYQEEVNS SDAKGVTATT TTTAGFGNPS YDIFNDYPQH NNNNDWDLQN  540
IGMVFSSHQD TTAAAAAASA AFSCSSSTQR KRAEHVQNHH QQQHLPSQSL NHMNGGGSVR  600
VKSERVAETV TCPPATTLFQ EQYNQEDLMS ALLKQEGLPL VDNEFDFDGY SIDNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22212274163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470396.10.0PREDICTED: two-component response regulator ARR2-like
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0D3A7S00.0A0A0D3A7S0_BRAOL; Two-component response regulator
STRINGBo1g055180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]