PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1897_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 130aa    MW: 15037.9 Da    PI: 9.1839
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1897_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.7e-1969123155
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 rrk+ ++tkeq + Lee F +n++++ +++ eLA+ l+L++rqV vWFqNrRa++
  RrC1897_p1  69 RRKKLRLTKEQSHLLEESFIQNHTLTSKQKLELATFLKLSQRQVEVWFQNRRARY 123
                 79999************************************************96 PP
2HD-ZIP_I/II74.42.1e-2470125156
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtkt 56 
                  +kk+rl+keq++lLEesF ++++L++++K ela+ L+l++rqv+vWFqnrRAR+  
   RrC1897_p1  70 RKKLRLTKEQSHLLEESFIQNHTLTSKQKLELATFLKLSQRQVEVWFQNRRARYVI 125
                  69***************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-2054123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1857123IPR009057Homeodomain-like
PROSITE profilePS5007117.31366126IPR001356Homeobox domain
SMARTSM003896.7E-1668130IPR001356Homeobox domain
CDDcd000867.09E-1569123No hitNo description
PfamPF000464.3E-1669123IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MALSPNSSSL ELSISLPSFS QLSSHPSSGE YMVRDLDINQ TPKTENRDWI MIDAAPHANE  60
EDSNSCSRRR KKLRLTKEQS HLLEESFIQN HTLTSKQKLE LATFLKLSQR QVEVWFQNRR  120
ARYVIQSTAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1181494e-77AK118149.1 Arabidopsis thaliana At1g70920 mRNA for unknown protein, complete cds, clone: RAFL19-45-C12.
GenBankAK1758374e-77AK175837.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-44-P21.
GenBankAK1759654e-77AK175965.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-65-O17.
GenBankBT0055944e-77BT005594.1 Arabidopsis thaliana clone U50868 putative homeodomain leucine zipper protein (At1g70920) mRNA, complete cds.
GenBankEU3391864e-77EU339186.1 Arabidopsis thaliana HD-ZIP transcription factor 18 (ATHB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458039.11e-71PREDICTED: homeobox-leucine zipper protein ATHB-X-like
SwissprotQ8GXM73e-51ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A0D3APS34e-71A0A0D3APS3_BRAOL; Uncharacterized protein
STRINGBo2g069680.17e-72(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.18e-49homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]